Evidence map›Paper›PMID 25947380›Full record

ArticleThe Journal of biological chemistry2015

The Tyrosine Kinase c-Src Specifically Binds to the Active Integrin αIIbβ3 to Initiate Outside-in Signaling in Platelets.

Yibing Wu, Lisa M Span, Patrik Nygren, Hua Zhu, David T Moore, Hong Cheng, Heinrich Roder, William F DeGrado, Joel S Bennett

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

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  14. Integrin αBlood · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yibing WuDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California 94158.
Lisa M SpanDepartments of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104.
Patrik NygrenDepartments of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104.
Hua ZhuDepartments of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104.
David T MooreBiochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104.
Hong ChengFox Chase Cancer Center, Philadelphia, Pennsylvania 19111.
Heinrich RoderBiochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104; Fox Chase Cancer Center, Philadelphia, Pennsylvania 19111.
William F DeGradoDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California 94158.
Joel S BennettDepartments of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104. Electronic address: bennetts@mail.med.upenn.edu.
University of Pennsylvania · USFox Chase Cancer Center · USUniversity of California, San Francisco · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
Subcellular Mechanisms pf Platelet ActivationP01HL040387 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI BENNETT, JOEL S. · 1988 to 2018
$35.5M
KINETICS OF EARLY EVENTS IN PROTEIN FOLDINGR01GM056250 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI RODER, HEINRICH · 1998 to 2014
$4.4M
De novo design of alpha-helical bundlesR37GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 2004 to 2013
$3.6M
DE NOVO DESIGN OF ALPHA HELICAL BUNDLESR01GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 1996 to 2016
$2.4M
NCI NIH HHS P01 CA06927NCI NIH HHS P30 CA006927NHLBI NIH HHS P01 HL040387NHLBI NIH HHS P01 HL40387NIGMS NIH HHS GM054616NIGMS NIH HHS R01 GM054616NIGMS NIH HHS R01 GM056250NIGMS NIH HHS R37 GM054616
6 · The paper itself

Abstract

It is currently believed that inactive tyrosine kinase c-Src in platelets binds to the cytoplasmic tail of the β3 integrin subunit via its SH3 domain. Although a recent NMR study supports this contention, it is likely that such binding would be precluded in inactive c-Src because an auto-inhibitory linker physically occludes the β3 tail binding site. Accordingly, we have re-examined c-Src binding to β3 by immunoprecipitation as well as NMR spectroscopy. In unstimulated platelets, we detected little to no interaction between c-Src and β3. Following platelet activation, however, c-Src was co-immunoprecipitated with β3 in a time-dependent manner and underwent progressive activation as well. We then measured chemical shift perturbations in the (15)N-labeled SH3 domain induced by the C-terminal β3 tail peptide NITYRGT and found that the peptide interacted with the SH3 domain RT-loop and surrounding residues. A control peptide whose last three residues where replaced with those of the β1 cytoplasmic tail induced only small chemical shift perturbations on the opposite face of the SH3 domain. Next, to mimic inactive c-Src, we found that the canonical polyproline peptide RPLPPLP prevented binding of the β3 peptide to the RT- loop. Under these conditions, the β3 peptide induced chemical shift perturbations similar to the negative control. We conclude that the primary interaction of c-Src with the β3 tail occurs in its activated state and at a site that overlaps with PPII binding site in its SH3 domain. Interactions of inactive c-Src with β3 are weak and insensitive to β3 tail mutations.

Indexed as

Blood PlateletsCSK Tyrosine-Protein KinaseEnzyme ActivationHumansPeptidesPlatelet Glycoprotein GPIIb-IIIa ComplexProtein BindingSignal Transductionsrc-Family Kinasessrc Homology DomainsCSK protein, humanCSK Tyrosine-Protein KinasePeptidesPlatelet Glycoprotein GPIIb-IIIa Complexsrc-Family Kinasesintegrinplateletsignal transductionSrcSrc homology 3 domain (SH3 domain)

Identifiers

PMID25947380
PMCPMC4505490
OpenAlexW1524524347

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.