Evidence map›Paper›PMID 25946123›Full record

ArticlePloS one2015

A New APEH Cluster with Antioxidant Functions in the Antarctic Hemoglobinless Icefish Chionodraco hamatus.

Alessia Riccio, Marta Gogliettino, Gianna Palmieri, Marco Balestrieri, Angelo Facchiano, Mosè Rossi, Stefania Palumbo, Giuseppe Monti, Ennio Cocca

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Alessia RiccioNational Research Council, Institute of Biosciences and BioResources (CNR-IBBR), Napoli, Italy.
Marta GogliettinoNational Research Council, Institute of Biosciences and BioResources (CNR-IBBR), Napoli, Italy.
Gianna PalmieriNational Research Council, Institute of Biosciences and BioResources (CNR-IBBR), Napoli, Italy.
Marco BalestrieriNational Research Council, Institute of Biosciences and BioResources (CNR-IBBR), Napoli, Italy.
Angelo FacchianoNational Research Council, Institute of Food Sciences (CNR-ISA), Avellino, Italy.
Mosè RossiNational Research Council, Institute of Biosciences and BioResources (CNR-IBBR), Napoli, Italy.
Stefania PalumboNational Research Council, Institute of Biosciences and BioResources (CNR-IBBR), Napoli, Italy.
Giuseppe MontiIttica Literno srl, Caserta, Italy.
Ennio CoccaNational Research Council, Institute of Biosciences and BioResources (CNR-IBBR), Napoli, Italy.
Institute of Biosciences and Bioresources · ITNational Research Council · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acylpeptide hydrolase (APEH) is a ubiquitous cytosolic protease that plays an important role in the detoxification of oxidised proteins. In this work, to further explore the physiological role of this enzyme, two apeh cDNAs were isolated from the Chionodraco hamatus icefish, which lives in the highly oxygenated Antarctic marine environment. The encoded proteins (APEH-1(Ch) and APEH-2(Ch)) were characterised in comparison with the uniquely expressed isoform from the temperate fish Dicentrarchus labrax (APEH-1Dl) and the two APEHs from the red-blooded Antarctic fish Trematomus bernacchii (APEH-1(Tb) and APEH-2(Tb)). Homology modelling and kinetic characterisation of the APEH isoforms provided new insights into their structure/function properties. APEH-2 isoforms were the only ones capable of hydrolysing oxidised proteins, with APEH-2(Ch) being more efficient than APEH-2(Tb) at this specific function. Therefore, this ability of APEH-2 isoforms is the result of an evolutionary adaptation due to the pressure of a richly oxygenated environment. The lack of expression of APEH-2 in the tissues of the temperate fish used as the controls further supported this hypothesis. In addition, analysis of gene expression showed a significant discrepancy between the levels of transcripts and those of proteins, especially for apeh-2 genes, which suggests the presence of post-transcriptional regulation mechanisms, triggered by cold-induced oxidative stress, that produce high basal levels of APEH-2 mRNA as a reserve that is ready to use in case of the accumulation of oxidised proteins.

Indexed as

Biological EvolutionAdaptation, PhysiologicalAnimalsAntarctic RegionsAntioxidantsBase SequenceGene Expression ProfilingGene Expression RegulationModels, MolecularOxidation-ReductionOxidative StressOxygenPeptide HydrolasesPerciformesPhylogenyProtein Isoformsacylaminoacyl-peptidaseAntioxidantsOxygenPeptide HydrolasesProtein IsoformsReactive Oxygen Species

Identifiers

PMID25946123
PMCPMC4422685
OpenAlexW276973453

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.