Evidence map›Paper›PMID 25945710›Full record

ArticleActa crystallographica. Section F, Structural biology communications2015

Structures of aspartate aminotransferases from Trypanosoma brucei, Leishmania major and Giardia lamblia.

Jan Abendroth, Ryan Choi, Abigail Wall, Matthew C Clifton, Christine M Lukacs, Bart L Staker, Wesley Van Voorhis, Peter Myler, Don D Lorimer, Thomas E Edwards

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Fatty acid uptake inFrontiers in cellular and infection microbiology · 2022
    Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Jan AbendrothSeattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.
Ryan ChoiSeattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.
Abigail WallSeattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.
Matthew C CliftonSeattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.
Christine M LukacsSeattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.
Bart L StakerSeattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.
Wesley Van VoorhisSeattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.
Peter MylerSeattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.
Don D LorimerSeattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.
Thomas E EdwardsSeattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.
Joint Center for Structural Genomics · USBeryllium (United States) · USCenter for Infectious Disease Research · USNorth Seattle College · USUniversity of Washington · US

Funding

NIAID NIH HHS HHSN272201200025CPHS HHS HHSN272201200025C
6 · The paper itself

Abstract

The structures of three aspartate aminotransferases (AATs) from eukaryotic pathogens were solved within the Seattle Structural Genomics Center for Infectious Disease (SSGCID). Both the open and closed conformations of AAT were observed. Pyridoxal phosphate was bound to the active site via a Schiff base to a conserved lysine. An active-site mutant showed that Trypanosoma brucei AAT still binds pyridoxal phosphate even in the absence of the tethering lysine. The structures highlight the challenges for the structure-based design of inhibitors targeting the active site, while showing options for inhibitor design targeting the N-terminal arm.

Indexed as

Aspartate AminotransferasesCrystallizationGiardia lambliaLeishmania majorProtein Structure, SecondaryTrypanosoma brucei bruceiAspartate Aminotransferasesaspartate aminotransferaseGiardia lambliaLeishmania majorpyridoxalphosphate lysineSeattle Structural Genomics Center for Infectious Diseasestructural genomicstransferaseTrypanosoma brucei

Identifiers

PMID25945710
PMCPMC4427166
OpenAlexW2084270768

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.