Evidence map›Paper›PMID 25944928›Full record

ArticleJournal of experimental botany2015

Expression of potato RNA-binding proteins StUBA2a/b and StUBA2c induces hypersensitive-like cell death and early leaf senescence in Arabidopsis.

Jong-Kuk Na, Jae-Kwang Kim, Dool-Yi Kim, Sarah M Assmann

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Jong-Kuk NaBiology Department, Pennsylvania State University, University Park, Pennsylvania 16802 USA Molecular Breeding Division, National Academy of Agricultural Science, RDA, Wanju-gun, Jeollabuk-do 565-851, Republic of Korea.
Jae-Kwang KimDivision of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University, Incheon 406-772, Republic of Korea.
Dool-Yi KimCrop Function Division, National Institute of Crop Science, Rural Development Administration, Wanju-gun, Jeollabuk-do 565-851, Republic of Korea Molecular Breeding Division, National Academy of Agricultural Science, RDA, Wanju-gun, Jeollabuk-do 565-851, Republic of Korea sma3@psu.edu.
Sarah M AssmannBiology Department, Pennsylvania State University, University Park, Pennsylvania 16802 USA sma3@psu.edu.
National Academy of Agricultural Science · KRIncheon National University · KRPennsylvania State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Arabidopsis thaliana genome encodes three RNA-binding proteins (RBPs), UBP1-associated protein 2a (UBA2a), UBA2b, and UBA2c, that contain two RNA-recognition motif (RRM) domains. They play important roles in wounding response and leaf senescence, and are homologs of Vicia faba abscisic-acid-activated protein kinase-interacting protein 1 (VfAKIP1). The potato (Solanum tuberosum) genome encodes at least seven AKIP1-like RBPs. Here, two potato RBPs have been characterized, StUBA2a/b and StUBA2c, that are homologous to VfAKIP1 and Arabidopsis UBA2s. Transient expression of StUBA2s induced a hypersensitive-like cell death phenotype in tobacco leaves, and an RRM-domain deletion assay of StUBA2s revealed that the first RRM domain is crucial for the phenotype. Unlike overexpression of Arabidopsis UBA2s, constitutive expression of StUBA2a/b in Arabidopsis did not cause growth arrest and lethality at the young seedling stage, but induced early leaf senescence. This phenotype was associated with increased expression of defence- and senescence-associated genes, including pathogen-related genes (PR) and a senescence-associated gene (SAG13), and it was aggravated upon flowering and ultimately resulted in a shortened life cycle. Leaf senescence of StUBA2a/b Arabidopsis plants was enhanced under darkness and was accompanied by H2O2 accumulation and altered expression of autophagy-associated genes, which likely cause cellular damage and are proximate causes of the early leaf senescence. Expression of salicylic acid signalling and biosynthetic genes was also upregulated in StUBA2a/b plants. Consistent with the localization of UBA2s-GFPs and VfAKIP1-GFP, soluble-modified GFP-StUBA2s localized in the nucleus within nuclear speckles. StUBA2s potentially can be considered for transgenic approaches to induce potato shoot senescence, which is desirable at harvest.

Indexed as

Amino Acid SequenceArabidopsisAutophagyCell DeathCloning, MolecularGene Expression Regulation, PlantGenes, PlantGreen Fluorescent ProteinsHydrogen PeroxideMolecular Sequence DataNicotianaPhylogenyPlant LeavesPlant ProteinsPlants, Genetically ModifiedRNA-Binding ProteinsGreen Fluorescent ProteinsHydrogen PeroxidePlant ProteinsRNA-Binding ProteinsAKIP proteinsArabidopsis thalianaRNA binding proteinssenescenceSolanum tuberosumUBA2 proteins.

Identifiers

PMID25944928
PMCPMC4473998
OpenAlexW2164732047

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.