Evidence map›Paper›PMID 25944819›Full record

ArticleInternational journal of epidemiology2015

Early gestation as the critical time-window for changes in the prenatal environment to affect the adult human blood methylome.

Elmar W Tobi, Roderick C Slieker, Aryeh D Stein, H Eka D Suchiman, P Eline Slagboom, Erik W van Zwet, Bastiaan T Heijmans, L H Lumey

Open access · bronzeAbstract readHistorical Article
In one paragraph

Article in International journal of epidemiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 5 pooled it
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 5 syntheses or guidelines pooled it, 175 citations in OpenAlex.

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  18. Accelerated biological aging six decades after prenatal famine exposure.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Elmar W TobiMolecular Epidemiology, Leiden University Medical Center, Leiden, The Netherlands.
Roderick C SliekerMolecular Epidemiology, Leiden University Medical Center, Leiden, The Netherlands.
Aryeh D SteinHubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, Georgia USA.
H Eka D SuchimanMolecular Epidemiology, Leiden University Medical Center, Leiden, The Netherlands.
P Eline SlagboomMolecular Epidemiology, Leiden University Medical Center, Leiden, The Netherlands.
Erik W van ZwetMedical Statistics and Bioinformatics, Leiden University Medical Center, Leiden, The Netherlands and.
Bastiaan T HeijmansMolecular Epidemiology, Leiden University Medical Center, Leiden, The Netherlands.
L H LumeyMolecular Epidemiology, Leiden University Medical Center, Leiden, The Netherlands, Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, New York USA lumey@columbia.edu.
Leiden University Medical Center · NLEmory University · USLeiden University · NL

Funding

PreNatal Nutrition and Adult DiseaseR01HL067914 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LUMEY, L H · 2001 to 2004
$2.0M
Prenatally induced DNA methylation profiles and disease risk at age 60R01AG042190 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LUMEY, L H · 2011 to 2013
$989k
NHLBI NIH HHS HL067914NIA NIH HHS AG042190
6 · The paper itself

Abstract

backgroundThe manipulation of pregnancy diets in animals can lead to changes in DNA methylation with phenotypic consequences in the offspring. Human studies have concentrated on the effects of nutrition during early gestation. Lacking in humans is an epigenome-wide association study of DNA methylation in relation to perturbations in nutrition across all gestation periods.

methodsWe used the quasi-experimental setting of the Dutch famine of 1944-45 to evaluate the impact of famine exposure during specific 10-week gestation periods, or during any time in gestation, on genome-wide DNA methylation levels at age ∼ 59 years. In addition, we evaluated the impact of exposure during a shorter pre- and post-conception period. DNA methylation was assessed using the Illumina 450k array in whole blood among 422 individuals with prenatal famine exposure and 463 time- or sibling-controls without prenatal famine exposure.

resultsFamine exposure during gestation weeks 1-10, but not weeks 11-20, 21-30 or 31-delivery, was associated with an increase in DNA methylation of CpG dinucleotides cg20823026 (FAM150B), cg10354880 (SLC38A2) and cg27370573 (PPAP2C) and a decrease of cg11496778 (OSBPL5/MRGPRG) (P < 5.9 × 10(-7), PFDR < 0.031). There was an increase in methylation of TACC1 and ZNF385A after exposure during any time in gestation (P < 2.0 × 10(-7), PFDR = 0.034) and a decrease of cg23989336 (TMEM105) after exposure around conception. These changes represent a shift of 0.3-0.6 standard deviations and are linked to genes involved in growth, development and metabolism.

conclusionEarly gestation, and not mid or late gestation, is identified as a critical time-period for adult DNA methylation changes in whole blood after prenatal exposure to famine.

Indexed as

DNA MethylationMaternal Nutritional Physiological PhenomenaCase-Control StudiesEnvironmentFemaleHistory, 20th CenturyHumansMaleMiddle AgedNetherlandsPregnancyPregnancy Trimester, FirstPrenatal Exposure Delayed EffectsStarvationDNA methylation, prenatal, Dutch Famine, Hunger Winter, exposure, nutrition

Identifiers

PMID25944819
PMCPMC4588866
OpenAlexW2103869399

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.