Evidence map›Paper›PMID 25944298›Full record

ArticleVaccine2015

Conformational instability governed by disulfide bonds partitions the dominant from subdominant helper T-cell responses specific for HIV-1 envelope glycoprotein gp120.

Hong-Nam P Nguyen, N Kalaya Steede, James E Robinson, Samuel J Landry

Abstract read
In one paragraph

Article in Vaccine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  6. Deimmunizing substitutions inThe Journal of biological chemistry · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Hong-Nam P NguyenDepartment of Biochemistry and Molecular Biology, Tulane University School of Medicine, 1430 Tulane Avenue, New Orleans, LA 70112, USA.
N Kalaya SteedeDepartment of Biochemistry and Molecular Biology, Tulane University School of Medicine, 1430 Tulane Avenue, New Orleans, LA 70112, USA.
James E RobinsonDepartment of Pediatrics, Tulane University School of Medicine, New Orleans, LA, USA.
Samuel J LandryDepartment of Biochemistry and Molecular Biology, Tulane University School of Medicine, 1430 Tulane Avenue, New Orleans, LA 70112, USA. Electronic address: landry@tulane.edu.
Tulane University · US

Funding

HIV ENV epitope engineeringR01AI080367 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI LANDRY, SAMUEL JOHN · 2009 to 2011
$1.1M
NIAID NIH HHS R01 AI080367NIAID NIH HHS R01-AI080367
6 · The paper itself

Abstract

Most individuals infected with human immunodeficiency virus type 1 (HIV-1) generate a CD4(+) T-cell response that is dominated by a few epitopes. Immunodominance may be counterproductive because a broad CD4(+) T-cell response is associated with reduced viral load. Previous studies indicated that antigen three-dimensional structure controls antigen processing and presentation and therefore CD4(+) T-cell epitope dominance. Dominant epitopes occur adjacent to the V1-V2, V3, and V4 loops because proteolytic antigen processing in the loops promotes presentation of adjacent sequences. In this study, three gp120 (strain JR-FL) variants were constructed, in which deletions of single outer-domain disulfide bonds were expected to introduce local conformational flexibility and promote presentation of additional CD4(+) T-cell epitopes. Following mucosal immunization of C57BL/6 mice with wild-type or variant gp120 lacking the V3-flanking disulfide bond, the typical pattern of dominant epitopes was observed, suggesting that the disulfide bond posed no barrier to antigen presentation. In mice that lacked gamma interferon-inducible lysosomal thioreductase (GILT), proliferative responses to the typically dominant epitopes of gp120 were selectively depressed, and the dominance pattern was rearranged. Deletion of the V3-flanking disulfide bond or one of the V4-flanking disulfide bonds partially restored highly proliferative responses to the typically dominant epitopes. These results reveal an acute dependence of dominant CD4(+) T-cell responses on the native gp120 conformation.

Indexed as

AIDS VaccinesAmino Acid SequenceAnimalsAntigen PresentationDisulfidesEpitope MappingEpitopes, T-LymphocyteHIV Envelope Protein gp120HumansImmunity, CellularImmunizationImmunodominant EpitopesMice, Inbred C57BLOxidoreductasesOxidoreductases Acting on Sulfur Group DonorsProtein ConformationAIDS VaccinesDisulfidesEpitopes, T-LymphocyteHIV Envelope Protein gp120Ifi30 protein, mouseImmunodominant EpitopesOxidoreductasesOxidoreductases Acting on Sulfur Group DonorsAntigen presentationAntigen processingCellular immune responseDisulfideLymphocyteProtein conformationprotein DenaturationT-helper

Identifiers

PMID25944298
PMCPMC4443875
OpenAlexW2002873117

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.