Evidence map›Paper›PMID 25941739›Full record

ArticleEnvironmental science & technology2015

An Aryl Hydrocarbon Receptor from the Salamander Ambystoma mexicanum Exhibits Low Sensitivity to 2,3,7,8-Tetrachlorodibenzo-p-dioxin.

Jenny Shoots, Domenico Fraccalvieri, Diana G Franks, Michael S Denison, Mark E Hahn, Laura Bonati, Wade H Powell

Abstract read
In one paragraph

Article in Environmental science & technology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Jenny Shoots†Biology Department, Kenyon College, Gambier, Ohio 43022, United States.
Domenico Fraccalvieri‡Department of Earth and Environmental Sciences, University of Milano-Bicocca, 20126 Milan, Italy.
Diana G Franks§Biology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, United States.
Michael S Denison∥Department of Environmental Toxicology, University of California-Davis, Davis, California 95616, United States.
Mark E Hahn§Biology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, United States.
Laura Bonati‡Department of Earth and Environmental Sciences, University of Milano-Bicocca, 20126 Milan, Italy.
Wade H Powell†Biology Department, Kenyon College, Gambier, Ohio 43022, United States.
Kenyon College · USUniversity of Milano-Bicocca · ITWoods Hole Oceanographic Institution · USUniversity of California, Davis · US

Funding

RECOMBINANT DETECTION SYSTEMS FOR DIOXIN LIKE CHEMICALSR01ES007685 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI DENISON, MICHAEL STEVEN · 1995 to 2019
$4.7M
AHR Signaling in Mammalian and Non-Mammalian ModelsR01ES006272 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 1999 to 2014
$4.1M
Multiple low-affinity aryl hydrocarbon receptors in the frog Xenopus laevisR15ES011130 · NIEHS · KENYON COLLEGE · PI POWELL, WADE H · 2001 to 2023
$1.8M
AH RECEPTOR IN NONMAMMALIAN SPECIESR29ES006272 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 1993 to 1997
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NIEHS NIH HHS ES006272NIEHS NIH HHS ES011130NIEHS NIH HHS ES07685NIEHS NIH HHS R01 ES006272NIEHS NIH HHS R01 ES007685NIEHS NIH HHS R15 ES011130
6 · The paper itself

Abstract

Structural features of the aryl hydrocarbon receptor (AHR) can underlie species- and population-specific differences in its affinity for 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). These differences often explain variations in TCDD toxicity. Frogs are relatively insensitive to dioxin, and Xenopus AHRs bind TCDD with low affinity. Weak TCDD binding results from the combination of three residues in the ligand-binding domain: A354 and A370, and N325. Here we sought to determine whether this mechanism of weak TCDD binding is shared by other amphibian AHRs. We isolated an AHR cDNA from the Mexican axolotl (Ambystoma mexicanum). The encoded polypeptide contains identical residues at positions that confer low TCDD affinity to X. laevis AHRs (A364, A380, and N335), and homology modeling predicts they protrude into the binding cavity. Axolotl AHR bound one-tenth the TCDD of mouse AHR in velocity sedimentation analysis, and in transactivation assays, the EC50 for TCDD was 23 nM, similar to X. laevis AHR1β (27 nM) and greater than AHR containing the mouse ligand-binding domain (0.08 nM). Sequence, modeled structure, and function indicate that axolotl AHR binds TCDD weakly, predicting that A. mexicanum lacks sensitivity toTCDD toxicity. We hypothesize that this characteristic of axolotl and Xenopus AHRs arose in a common ancestor of the Caudata and Anura.

Indexed as

Ambystoma mexicanumAmino Acid SequenceAnimalsCarbazolesGenes, ReporterMiceModels, MolecularMolecular Sequence DataPhylogenyPolychlorinated DibenzodioxinsReceptors, Aryl HydrocarbonTranscriptional ActivationXenopus laevis6-formylindolo(3,2-b)carbazoleCarbazolesPolychlorinated DibenzodioxinsReceptors, Aryl Hydrocarbon

Identifiers

PMID25941739
PMCPMC4454367
OpenAlexW328024152

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.