Evidence map›Paper›PMID 25941408›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Activation of the bacterial thermosensor DesK involves a serine zipper dimerization motif that is modulated by bilayer thickness.

Larisa Estefanía Cybulski, Joost Ballering, Anastassiia Moussatova, Maria Eugenia Inda, Daniela B Vazquez, Tsjerk A Wassenaar, Diego de Mendoza, D Peter Tieleman, J Antoinette Killian

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Homeostatic regulation of intrinsic lipid curvature in eukaryotic cells.bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Regulated strategies of cold-adapted microorganisms in response to cold: a review.Environmental science and pollution research international · 2021
    Review
  16. Review
  17. Article
  18. Article
  19. Driving the catalytic activity of a transmembrane thermosensor kinase.Cellular and molecular life sciences : CMLS · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Larisa Estefanía CybulskiDepartamento de Microbiología and larisa.cybulski@gmail.com j.a.killian@uu.nl.
Joost BalleringMembrane Biochemistry and Biophysics, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, 3584 CH Utrecht, The Netherlands;
Anastassiia MoussatovaDepartment of Biological Sciences and Centre for Biomolecular Simulation, University of Calgary, Calgary, Canada T2N 1N4; and.
Maria Eugenia IndaDepartamento de Microbiología and.
Daniela B VazquezDepartamento de Microbiología and.
Tsjerk A WassenaarComputational Biology, Department of Biology, University of Erlangen-Nürnberg, 91052 Erlangen, Germany.
Diego de MendozaInstituto de Biología Molecular y Celular de Rosario, Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, 2000 Rosario, Argentina;
D Peter TielemanDepartment of Biological Sciences and Centre for Biomolecular Simulation, University of Calgary, Calgary, Canada T2N 1N4; and.
J Antoinette KillianMembrane Biochemistry and Biophysics, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, 3584 CH Utrecht, The Netherlands; larisa.cybulski@gmail.com j.a.killian@uu.nl.
University of Calgary · CAUtrecht University · NLFriedrich-Alexander-Universität Erlangen-Nürnberg · DEInstituto de Biología Molecular y Celular de Rosario · AR

Funding

Canadian Institutes of Health Research MOP-62690
6 · The paper itself

Abstract

DesK is a bacterial thermosensor protein involved in maintaining membrane fluidity in response to changes in environmental temperature. Most likely, the protein is activated by changes in membrane thickness, but the molecular mechanism of sensing and signaling is still poorly understood. Here we aimed to elucidate the mode of action of DesK by studying the so-called "minimal sensor DesK" (MS-DesK), in which sensing and signaling are captured in a single transmembrane segment. This simplified version of the sensor allows investigation of membrane thickness-dependent protein-lipid interactions simply by using synthetic peptides, corresponding to the membrane-spanning parts of functional and nonfunctional mutants of MS-DesK incorporated in lipid bilayers with varying thicknesses. The lipid-dependent behavior of the peptides was investigated by circular dichroism, tryptophan fluorescence, and molecular modeling. These experiments were complemented with in vivo functional studies on MS-DesK mutants. Based on the results, we constructed a model that suggests a new mechanism for sensing in which the protein is present as a dimer and responds to an increase in bilayer thickness by membrane incorporation of a C-terminal hydrophilic motif. This results in exposure of three serines on the same side of the transmembrane helices of MS-DesK, triggering a switching of the dimerization interface to allow the formation of a serine zipper. The final result is activation of the kinase state of MS-DesK.

Indexed as

Models, MolecularAmino Acid MotifsCircular DichroismDimerizationLipid BilayersMolecular Dynamics SimulationProtein ConformationSerineSignal TransductionSpectrometry, FluorescenceThermosensingLipid BilayersSerinehelix–helix interactionlipid–protein interactionthermosensingtransmembrane helix dimerizationtwo-component system

Identifiers

PMID25941408
PMCPMC4443340
OpenAlexW1548629061

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.