Evidence map›Paper›PMID 25940918›Full record

ArticleMicrobiologyOpen2015

Comparative genomics of Pseudomonas syringae pv. syringae strains B301D and HS191 and insights into intrapathovar traits associated with plant pathogenesis.

Aravind Ravindran, Neha Jalan, Joshua S Yuan, Nian Wang, Dennis C Gross

Open access · goldAbstract readComparative Study
In one paragraph

Article in MicrobiologyOpen, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
7.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 42 citations in OpenAlex.

  1. International journal of systematic and evolutionary microbiology · 2024
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  5. Molecules (Basel, Switzerland) · 2022
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  6. Comparative Genomics ofFrontiers in microbiology · 2022
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  7. Identification of the Genes of the Plant PathogenFrontiers in microbiology · 2022
    Article
  8. Article
  9. Inference of Convergent Gene Acquisition AmongFrontiers in microbiology · 2019
    Article
  10. Article
  11. Frontiers in microbiology · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Aravind RavindranDepartment of Plant Pathology and Microbiology, Texas A&M University, College Station, Texas, 77843-2132.
Neha JalanDepartment of Microbiology and Cell Sciences, Citrus Research and Education Center, University of Florida, 700 Experiment Station Road, Lake Alfred, Florida, 33850.
Joshua S YuanDepartment of Plant Pathology and Microbiology, Texas A&M University, College Station, Texas, 77843-2132.
Nian WangDepartment of Microbiology and Cell Sciences, Citrus Research and Education Center, University of Florida, 700 Experiment Station Road, Lake Alfred, Florida, 33850.
Dennis C GrossDepartment of Plant Pathology and Microbiology, Texas A&M University, College Station, Texas, 77843-2132.
Texas A&M University · USUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas syringae pv. syringae is a common plant-associated bacterium that causes diseases of both monocot and dicot plants worldwide. To help delineate traits critical to adaptation and survival in the plant environment, we generated complete genome sequences of P. syringae pv. syringae strains B301D and HS191, which represent dicot and monocot strains with distinct host specificities. Intrapathovar comparisons of the B301D (6.09 Mb) and HS191 (5.95 Mb plus a 52 kb pCG131 plasmid) genomes to the previously sequenced B728a genome demonstrated that the shared genes encompass about 83% of each genome, and include genes for siderophore biosynthesis, osmotolerance, and extracellular polysaccharide production. Between 7% and 12% of the genes are unique among the genomes, and most of the unique gene regions carry transposons, phage elements, or IS elements associated with horizontal gene transfer. Differences are observed in the type III effector composition for the three strains that likely influences host range. The HS191 genome had the largest number at 25 of effector genes, and seven effector genes are specific to this monocot strain. Toxin production is another major trait associated with virulence of P. syringae pv. syringae, and HS191 is distinguished by genes for production of syringopeptin SP25 and mangotoxin.

Indexed as

Genome, BacterialDNA, BacterialMolecular Sequence DataPlant DiseasesPseudomonas syringaeSequence Analysis, DNAVirulence FactorsDNA, BacterialVirulence FactorsComparative genomicseffector genegenome sequenceplant pathogenPseudomonas syringae

Identifiers

PMID25940918
PMCPMC4554452
OpenAlexW1498705091

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.