Evidence map›Paper›PMID 25940626›Full record

ArticleNucleic acids research2015

The telomerase essential N-terminal domain promotes DNA synthesis by stabilizing short RNA-DNA hybrids.

Benjamin M Akiyama, Joseph W Parks, Michael D Stone

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Telomerase structural biology comes of age.Current opinion in structural biology · 2022
    Review
  7. Article
  8. Article
  9. A structurally conserved human andProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Review
  11. Article
  12. Structural Biology of Telomerase.Cold Spring Harbor perspectives in biology · 2019
    Review
  13. Single-Molecule Analysis of Reverse Transcriptase Enzymes.Cold Spring Harbor perspectives in biology · 2019
    Review
  14. Article
  15. Article
  16. Article
  17. New perspectives on telomerase RNA structure and function.Wiley interdisciplinary reviews. RNA · 2018
    Review
  18. Article
  19. Structural biology of telomerase and its interaction at telomeres.Current opinion in structural biology · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Benjamin M AkiyamaDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, CA 95064, USA Center for Molecular Biology of RNA, University of California, Santa Cruz, CA 95064, USA.
Joseph W ParksDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064, USA Center for Molecular Biology of RNA, University of California, Santa Cruz, CA 95064, USA.
Michael D StoneDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064, USA Center for Molecular Biology of RNA, University of California, Santa Cruz, CA 95064, USA mds@ucsc.edu.
University of California, Santa Cruz · US

Funding

Structure and dynamics of the Tetrahymena telomerase ribonucleoproteinR01GM095850 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI STONE, MICHAEL D · 2011 to 2023
$4.4M
Training Program/Molecular/Cell/Developmental BiologyT32GM008646 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI STROME, SUSAN · 1999 to 2018
$3.7M
NIGMS NIH HHS GM095850NIGMS NIH HHS R01 GM095850NIGMS NIH HHS T32 GM008646NIGMS NIH HHS T32 GM8646
6 · The paper itself

Abstract

Telomerase is an enzyme that adds repetitive DNA sequences to the ends of chromosomes and consists of two main subunits: the telomerase reverse transcriptase (TERT) protein and an associated telomerase RNA (TER). The telomerase essential N-terminal (TEN) domain is a conserved region of TERT proposed to mediate DNA substrate interactions. Here, we have employed single molecule telomerase binding assays to investigate the function of the TEN domain. Our results reveal telomeric DNA substrates bound to telomerase exhibit a dynamic equilibrium between two states: a docked conformation and an alternative conformation. The relative stabilities of the docked and alternative states correlate with the number of basepairs that can be formed between the DNA substrate and the RNA template, with more basepairing favoring the docked state. The docked state is further buttressed by the TEN domain and mutations within the TEN domain substantially alter the DNA substrate structural equilibrium. We propose a model in which the TEN domain stabilizes short RNA-DNA duplexes in the active site of the enzyme, promoting the docked state to augment telomerase processivity.

Indexed as

DNADNA PrimersMutationProtein ConformationProtein Structure, TertiaryRNATelomeraseTelomereTemplates, GeneticTetrahymenaDNADNA PrimersRNATelomerase

Identifiers

PMID25940626
PMCPMC4477650
OpenAlexW1921803558

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.