Evidence map›Paper›PMID 25939370›Full record

ArticleThe Plant journal : for cell and molecular biology2015

Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells.

Megan M Augustin, Dan R Ruzicka, Ashutosh K Shukla, Jörg M Augustin, Courtney M Starks, Mark O'Neil-Johnson, Michael R McKain, Bradley S Evans, Matt D Barrett, Ann Smithson and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 82 citations in OpenAlex.

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  19. Article
  20. Molecules (Basel, Switzerland) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 5 countries.

Megan M AugustinDonald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO, 63132, USA.
Dan R RuzickaDonald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO, 63132, USA.
Ashutosh K ShuklaDonald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO, 63132, USA.
Jörg M AugustinDonald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO, 63132, USA.
Courtney M StarksSequoia Sciences, 1912 Innerbelt Business Center Dr, St. Louis, MO, 63114, USA.
Mark O'Neil-JohnsonSequoia Sciences, 1912 Innerbelt Business Center Dr, St. Louis, MO, 63114, USA.
Michael R McKainDonald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO, 63132, USA.
Bradley S EvansDonald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO, 63132, USA.
Matt D BarrettBotanic Gardens and Parks Authority, Kings Park and Botanic Garden, Fraser Avenue, West Perth 6005, WA, Australia.
Ann SmithsonBotanic Gardens and Parks Authority, Kings Park and Botanic Garden, Fraser Avenue, West Perth 6005, WA, Australia.
Gane Ka-Shu WongDepartment of Biological Sciences, University of Alberta, Edmonton, AB, Canada.
Michael K DeyholosUniversity of Alberta, 116 St and 85 Ave, Edmonton, AB T6G 2R3, Canada.
Patrick P EdgerDivision of Biological Sciences, 311 Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA.
J Chris PiresDivision of Biological Sciences, 311 Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA.
James H Leebens-MackFranklin College of Arts and Sciences, University of Georgia, Athens, GA, 30602, USA.
David A MannInfinity Pharmaceuticals, 780 Memorial Drive, Cambridge, MA, 02139, USA.
Toni M KutchanDonald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO, 63132, USA.
Donald Danforth Plant Science Center · USBotanic Gardens and Parks Authority · AUSequoia Sciences (United States) · USUniversity of Alberta · CACellular Dynamics International (United States) · USCentral Institute of Medicinal and Aromatic Plants · INMonsanto (United States) · USUniversity of California, Berkeley · USUniversity of Georgia · USUniversity of Missouri · US

Funding

Evolution of Pathways to Pharmaceuticals in the Poppy FamilyR01DA025197 · NIDA · DONALD DANFORTH PLANT SCIENCE CENTER · PI DEPAMPHILIS, CLAUDE W, KUTCHAN, TONI M · 2009 to 2010
$602k
NIDA NIH HHS 1R01-DA025197-02NIDA NIH HHS R01 DA025197
6 · The paper itself

Abstract

Steroid alkaloids have been shown to elicit a wide range of pharmacological effects that include anticancer and antifungal activities. Understanding the biosynthesis of these molecules is essential to bioengineering for sustainable production. Herein, we investigate the biosynthetic pathway to cyclopamine, a steroid alkaloid that shows promising antineoplastic activities. Supply of cyclopamine is limited, as the current source is solely derived from wild collection of the plant Veratrum californicum. To elucidate the early stages of the pathway to cyclopamine, we interrogated a V. californicum RNA-seq dataset using the cyclopamine accumulation profile as a predefined model for gene expression with the pattern-matching algorithm Haystack. Refactoring candidate genes in Sf9 insect cells led to discovery of four enzymes that catalyze the first six steps in steroid alkaloid biosynthesis to produce verazine, a predicted precursor to cyclopamine. Three of the enzymes are cytochromes P450 while the fourth is a γ-aminobutyrate transaminase; together they produce verazine from cholesterol.

Indexed as

4-Aminobutyrate TransaminaseAlgorithmsAnimalsBiosynthetic PathwaysCytochrome P-450 Enzyme SystemEnzymesGene Expression ProfilingPlant ProteinsSequence Analysis, RNASf9 CellsTranscriptomeVeratrumVeratrum Alkaloids4-Aminobutyrate TransaminasecyclopamineCytochrome P-450 Enzyme SystemEnzymesPlant ProteinsVeratrum AlkaloidsverazineCalifornia corn lilycyclopamineHaystacksteroid alkaloidsVeratrum californicumverazine

Identifiers

PMID25939370
PMCPMC4464957
OpenAlexW2156207906

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.