Evidence map›Paper›PMID 25938537›Full record

ArticlePloS one2015

Translational activation of oskar mRNA: reevaluation of the role and importance of a 5' regulatory element [corrected].

Matt Kanke, Paul M Macdonald

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. MultipleJournal of cell science · 2017
    Article
  3. Article
  4. Germ Plasm Biogenesis--An Oskar-Centric Perspective.Current topics in developmental biology · 2016
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Matt KankeDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas, United States of America.
Paul M MacdonaldDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas, United States of America.
The University of Texas at Austin · US

Funding

REGULATED MRNA TRANSLATION IN DROSOPHILA BODY PATTERNINGR01GM054409 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI MACDONALD, PAUL M. · 1995 to 2010
$2.1M
NIGMS NIH HHS GM54409NIGMS NIH HHS R01 GM054409
6 · The paper itself

Abstract

Local translation of oskar (osk) mRNA at the posterior pole of the Drosophila oocyte is essential for axial patterning of the embryo, and is achieved by a program of translational repression, mRNA localization, and translational activation. Multiple forms of repression are used to prevent Oskar protein from accumulating at sites other than the oocyte posterior. Activation is mediated by several types of cis-acting elements, which presumably control different forms of activation. We characterize a 5' element, positioned in the coding region for the Long Osk isoform and in the extended 5' UTR for translation of the Short Osk isoform. This element was previously thought to be essential for osk mRNA translation, with a role in posterior-specific release from repression. From our work, which includes assays which separate the effects of mutations on RNA regulatory elements and protein coding capacity, we find that the element is not essential, and conclude that there is no evidence supporting a role for the element only at the posterior of the oocyte. The 5' element has a redundant role, and is only required when Long Osk is not translated from the same mRNA. Mutations in the element do disrupt the anchoring function of Long Osk protein through their effects on the amino acid sequence, a confounding influence on interpretation of previous experiments.

Indexed as

5' Untranslated RegionsProtein BiosynthesisRegulatory Sequences, Nucleic AcidChromosome MappingConserved SequenceDrosophila ProteinsGene OrderPeptide Chain Initiation, TranslationalRNA, Messenger5' Untranslated RegionsDrosophila Proteinsosk protein, DrosophilaRNA, Messenger

Identifiers

PMID25938537
PMCPMC4418564
OpenAlexW2211267687

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.