Evidence map›Paper›PMID 25937884›Full record

ArticleJournal of biomedical semantics2015

Exploring adverse drug events at the class level.

Rainer Winnenburg, Alfred Sorbello, Olivier Bodenreider

Abstract read
In one paragraph

Article in Journal of biomedical semantics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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  9. Vaccine and Drug Ontology Studies (VDOS 2014).Journal of biomedical semantics · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Rainer WinnenburgCenter for Biomedical Informatics Research, Stanford University, Stanford, CA USA.
Alfred SorbelloCenter for Drug Evaluation and Research, US Food and Drug Administration, Silver Spring, MD USA.
Olivier BodenreiderLister Hill National Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD USA.

Funding

Interpretable deep learning models for translational medicine RenewalR01LM012011 · NLM · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Tanner J. Freeman, XINGHUA LU · 2015 to 2026
$3.6M
NLM NIH HHS R01 LM012011
6 · The paper itself

Abstract

backgroundWhile the association between a drug and an adverse event (ADE) is generally detected at the level of individual drugs, ADEs are often discussed at the class level, i.e., at the level of pharmacologic classes (e.g., in drug labels). We propose two approaches, one visual and one computational, to exploring the contribution of individual drugs to the class signal.

methodsHaving established a dataset of ADEs from MEDLINE, we aggregate drugs into ATC classes and ADEs into high-level MeSH terms. We compute statistical associations between drugs and ADEs at the drug level and at the class level. Finally, we visualize the signals at increasing levels of resolution using heat maps. We also automate the exploration of drug-ADE associations at the class level using clustering techniques.

resultsUsing our visual approach, we were able to uncover known associations, e.g., between fluoroquinolones and tendon injuries, and between statins and rhabdomyolysis. Using our computational approach, we systematically analyzed 488 associations between a drug class and an ADE.

conclusionsThe findings gained from our exploratory techniques should be of interest to the curators of ADE repositories and drug safety professionals. Our approach can be applied to different drug-ADE datasets, using different drug classification systems and different signal detection algorithms.

Indexed as

Adverse drug eventsAnatomical Therapeutic Chemical (ATC) drug classification systemClass effectDrug classesHeat mapsPharmacovigilance

Identifiers

PMID25937884
PMCPMC4416343

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.