Evidence map›Paper›PMID 25937446›Full record

ArticleAmerican journal of human genetics2015

A Potential Contributory Role for Ciliary Dysfunction in the 16p11.2 600 kb BP4-BP5 Pathology.

Eugenia Migliavacca, Christelle Golzio, Katrin Männik, Ian Blumenthal, Edwin C Oh, Louise Harewood, Jack A Kosmicki, Maria Nicla Loviglio, Giuliana Giannuzzi, Loyse Hippolyte and 12 more

Abstract read
In one paragraph

Article in American journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Review
  2. Article
  3. Frontiers in molecular neuroscience · 2026
    Article
  4. Article
  5. The pleiotropic spectrum of proximal 16p11.2 CNVs.American journal of human genetics · 2024
    Review
  6. Genome research · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Technologies, strategies, and cautions when deconvoluting genome-wide association signals: FTO in focus.Obesity reviews : an official journal of the International Association for the Study of Obesity · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. TBX6 as a cause of a combined skeletal-kidney dysplasia syndrome.American journal of medical genetics. Part A · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Eugenia MigliavaccaCenter for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland; Swiss Institute of Bioinformatics (SIB), 1015 Lausanne, Switzerland.
Christelle GolzioCenter for Human Disease Modeling and Department of Cell Biology, Duke University, Durham, NC 27710, USA.
Katrin MännikCenter for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland; Estonian Genome Center, University of Tartu, Riia 23B, 51010 Tartu, Estonia.
Ian BlumenthalCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA.
Edwin C OhCenter for Human Disease Modeling and Department of Cell Biology, Duke University, Durham, NC 27710, USA.
Louise HarewoodCenter for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.
Jack A KosmickiAnalytic and Translational Genetics Unit, Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Program in Medical and Population Genetics and Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, 7 Cambridge Center, Cambridge, MA 02142, USA.
Maria Nicla LoviglioCenter for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.
Giuliana GiannuzziCenter for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.
Loyse HippolyteService of Medical Genetics, Lausanne University Hospital (CHUV), 1011 Lausanne, Switzerland.
Anne M MaillardService of Medical Genetics, Lausanne University Hospital (CHUV), 1011 Lausanne, Switzerland.
Ali Abdullah AlfaizCenter for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland; Swiss Institute of Bioinformatics (SIB), 1015 Lausanne, Switzerland.
16p11.2 European Consortium
Mieke M van HaelstDepartment of Medical Genetics, University Medical Center Utrecht, Lundlaan 6, 3508 AB Utrecht, the Netherlands.
Joris AndrieuxInstitut de Génétique Médicale, CHRU de Lille - Hôpital Jeanne de Flandre, Avenue Eugène Avinée, 59037 Lille, France.
James F GusellaCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA; Departments of Genetics and Neurology, Harvard Medical School, Boston, MA 02114, USA.
Mark J DalyAnalytic and Translational Genetics Unit, Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Program in Medical and Population Genetics and Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, 7 Cambridge Center, Cambridge, MA 02142, USA.
Jacques S BeckmannSwiss Institute of Bioinformatics (SIB), 1015 Lausanne, Switzerland; Service of Medical Genetics, Lausanne University Hospital (CHUV), 1011 Lausanne, Switzerland; Department of Medical Genetics, University of Lausanne, 1011 Lausanne, Switzerland.
Sébastien JacquemontService of Medical Genetics, Lausanne University Hospital (CHUV), 1011 Lausanne, Switzerland.
Michael E TalkowskiCenter for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA; Departments of Genetics and Neurology, Harvard Medical School, Boston, MA 02114, USA.
Nicholas KatsanisCenter for Human Disease Modeling and Department of Cell Biology, Duke University, Durham, NC 27710, USA. Electronic address: katsanis@cellbio.duke.edu.
Alexandre ReymondCenter for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland. Electronic address: alexandre.reymond@unil.ch.

Funding

RAPID GENE DISCOVERYP01GM061354 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI TALKOWSKI, MICHAEL E · 2001 to 2019
$24.3M
Project 3P50MH094268 · NIMH · JOHNS HOPKINS UNIVERSITY · PI SAWA, AKIRA · 2011 to 2020
$19.9M
Molecular Genetics of BBSR01HD042601 · NICHD · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2003 to 2023
$8.2M
Genetic and Functional Studies of Human Ciliary SyndromesR01DK072301 · NIDDK · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2005 to 2022
$7.2M
The Role of Basa Bodies in Wnt SignalingR01DK075972 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI KATSANIS, NICHOLAS · 2007 to 2015
$3.1M
Dissecting recurrent microdeletion syndromes using dual-guide genome editingR01NS093200 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI GUSELLA, JAMES F · 2015 to 2019
$2.9M
Complex Genetic Architecture of Chromosomal Aberrations in AutismR00MH095867 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI TALKOWSKI, MICHAEL E · 2014 to 2016
$747k
Complex Genetic Architecture of Chromosomal Aberrations in AutismK99MH095867 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI TALKOWSKI, MICHAEL E · 2012 to 2013
$186k
NICHD NIH HHS R01 HD042601NIDDK NIH HHS R01 DK072301NIDDK NIH HHS R01 DK075972NIGMS NIH HHS P01 GM061354NIMH NIH HHS K99 MH095867NIMH NIH HHS MH095867NIMH NIH HHS P50MH094260NIMH NIH HHS P50 MH094268NIMH NIH HHS R00 MH095867NINDS NIH HHS R01 NS093200
6 · The paper itself

Abstract

The 16p11.2 600 kb copy-number variants (CNVs) are associated with mirror phenotypes on BMI, head circumference, and brain volume and represent frequent genetic lesions in autism spectrum disorders (ASDs) and schizophrenia. Here we interrogated the transcriptome of individuals carrying reciprocal 16p11.2 CNVs. Transcript perturbations correlated with clinical endophenotypes and were enriched for genes associated with ASDs, abnormalities of head size, and ciliopathies. Ciliary gene expression was also perturbed in orthologous mouse models, raising the possibility that ciliary dysfunction contributes to 16p11.2 pathologies. In support of this hypothesis, we found structural ciliary defects in the CA1 hippocampal region of 16p11.2 duplication mice. Moreover, by using an established zebrafish model, we show genetic interaction between KCTD13, a key driver of the mirrored neuroanatomical phenotypes of the 16p11.2 CNV, and ciliopathy-associated genes. Overexpression of BBS7 rescues head size and neuroanatomical defects of kctd13 morphants, whereas suppression or overexpression of CEP290 rescues phenotypes induced by KCTD13 under- or overexpression, respectively. Our data suggest that dysregulation of ciliopathy genes contributes to the clinical phenotypes of these CNVs.

Indexed as

AnimalsBrainChildChild Development Disorders, PervasiveChromosome DeletionChromosomes, Human, Pair 16Ciliary BodyDNA Copy Number VariationsGene Expression RegulationHumansMicePotassium Channels, Voltage-GatedSchizophreniaTranscriptomeZebrafishZebrafish Proteinskctd15b protein, zebrafishPotassium Channels, Voltage-GatedZebrafish Proteins

Identifiers

PMID25937446
PMCPMC4570289

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.