Evidence map›Paper›PMID 25936594›Full record

ArticleJournal of autoimmunity2015

Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.

Yaron Tomer, Lawrence M Dolan, George Kahaly, Jasmin Divers, Ralph B D'Agostino, Giuseppina Imperatore, Dana Dabelea, Santica Marcovina, Mary Helen Black, Catherine Pihoker and 8 more

Open access · greenAbstract read
In one paragraph

Article in Journal of autoimmunity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 3 pooled it
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 3 syntheses or guidelines pooled it, 79 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 11 institutions in 3 countries.

Yaron TomerDivision of Endocrinology, Icahn School of Medicine at Mount Sinai, New York, NY, USA; James J. Peters Veterans Affairs Medical Center, Bronx, NY, USA. Electronic address: Yaron.Tomer@mssm.edu.
Lawrence M DolanDivision of Pediatric Endocrinology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
George KahalyThyroid Research Laboratory, Johannes Gutenberg University Medical Center, Mainz, Germany.
Jasmin DiversDepartment of Biostatistical Sciences, Wake Forest School of Medicine, Winston-Salem, NC, USA.
Ralph B D'AgostinoDepartment of Biostatistical Sciences, Wake Forest School of Medicine, Winston-Salem, NC, USA.
Giuseppina ImperatoreDivision of Diabetes Translation, National Center for Chronic Disease Prevention and Health Promotion, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Dana DabeleaColorado School of Public Health, University of Colorado, Denver, CO, USA.
Santica MarcovinaNorthwest Lipid Metabolism and Diabetes Research Laboratories, University of Washington, Seattle, WA, USA.
Mary Helen BlackKaiser Permanente Southern California, Department of Research and Evaluation, Pasadena, CA, USA.
Catherine PihokerDepartment of Pediatrics, University of Washington, Seattle, WA, USA.
Alia HashamDivision of Endocrinology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Sara Salehi HammerstadDivision of Endocrinology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
David A GreenbergBattelle Center for Mathematical Medicine, Nationwide Children's Hospital, Columbus, OH, USA.
Vaneet LotayThe Charles Bronfman Institute for Personalized Medicine, Department of Medicine Bioinformatics Core, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Weijia ZhangThe Charles Bronfman Institute for Personalized Medicine, Department of Medicine Bioinformatics Core, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Maria Cristina MontiDepartment of Public Health, Neurosciences, Experimental and Forensic Medicine, University of Pavia, Pavia, Italy.
Nina MatheisThyroid Research Laboratory, Johannes Gutenberg University Medical Center, Mainz, Germany.
SEARCH for Diabetes in Youth Study
Icahn School of Medicine at Mount Sinai · USUniversity of Washington · USWake Forest University · USCincinnati Children's Hospital Medical Center · USColorado School of Public Health · USJohannes Gutenberg University Mainz · DEKaiser Permanente · USNational Center for Chronic Disease Prevention and Health Promotion · USNationwide Children's Hospital · USUniversity Medical Center of the Johannes Gutenberg University Mainz · DEUniversity of Pavia · IT

Funding

Transform Dissemination and Implementation Science in CTSA ProgramsUL1TR002319 · NCATS · UNIVERSITY OF WASHINGTON · PI John K. Amory · 2017 to 2026
$100.0M
Institute of Translational Health SciencesUL1TR000423 · NCATS · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2012 to 2016
$49.4M
Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Karin E Bornfeldt · 1986 to 2026
$41.4M
Colorado Clinical and Translational Science Institute (UL1)UL1TR000154 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2012 to 2013
$20.4M
UCHSC DIABETES ENDOCRINOLOGY RESEARCH CENTERP30DK057516 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI HUTTON, JOHN C · 2000 to 2010
$14.0M
SOUTH CAROLINA CLINICAL & TRANSLATIONAL RESEARCH INSTITUTE (SCTR)UL1RR029882 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BRADY, KATHLEEN T. · 2009 to 2011
$10.1M
Cincinnati Center for Clinical and Translational Sciences and TrainingUL1TR000077 · NCATS · UNIVERSITY OF CINCINNATI · PI HEUBI, JAMES E. · 2012 to 2014
$9.9M
Mapping Autoimmune Diabetes and Thyroiditis GenesR01DK067555 · NIDDK · UNIVERSITY OF CINCINNATI · PI MIHAELA STEFAN LIFSHITZ, YARON TOMER · 2005 to 2026
$5.8M
Thyroid Derived Peptide Presentation by HLA-DR in ThyroiditisR01DK073681 · NIDDK · UNIVERSITY OF CINCINNATI · PI TOMER, YARON · 2006 to 2022
$5.0M
SEARCH for Diabetes in Youth Coordinating CenterU01DP000250 · DP · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI BELL, RONNY A · 2005 to 2009
$4.8M
Identifying Genes Linked to Autoimmune Thyroid DiseasesR01DK061659 · NIDDK · UNIVERSITY OF CINCINNATI · PI TOMER, YARON · 2002 to 2017
$4.1M
HSRD VA HIR 10-001NCATS NIH HHS 8 UL1 TR000077NCATS NIH HHS UL1 TR000077NCATS NIH HHS UL1 TR000154NCATS NIH HHS UL1TR000154NCATS NIH HHS UL1 TR000423NCATS NIH HHS UL1 TR001082NCATS NIH HHS UL1 TR002319NCATS NIH HHS UL1 TR00423NCCDPHP CDC HHS 1U18DP002709NCCDPHP CDC HHS DP-05-069NCCDPHP CDC HHS DP-10-001NCCDPHP CDC HHS U01 DP000244NCCDPHP CDC HHS U01 DP000245NCCDPHP CDC HHS U01 DP000246NCCDPHP CDC HHS U01 DP000247NCCDPHP CDC HHS U01 DP000248NCCDPHP CDC HHS U01 DP000250NCCDPHP CDC HHS U01DP000250NCCDPHP CDC HHS U01 DP000254NCCDPHP CDC HHS U18 DP002708NCCDPHP CDC HHS U18DP002708NCCDPHP CDC HHS U18 DP002709NCCDPHP CDC HHS U18 DP002710NCCDPHP CDC HHS U18DP002710-01NCCDPHP CDC HHS U18 DP002714NCCDPHP CDC HHS U18DP002714NCCDPHP CDC HHS U18 DP006134NCRR NIH HHS UL1 RR029882NCRR NIH HHS UL1RR029882NIDDK NIH HHS DK067555NIDDK NIH HHS DK073681NIDDK NIH HHS DK61659NIDDK NIH HHS NIH P30 DK57516NIDDK NIH HHS P30 DK017047NIDDK NIH HHS P30 DK057516NIDDK NIH HHS R01 DK061659NIDDK NIH HHS R01 DK067555NIDDK NIH HHS R01 DK073681PHS HHS 00097PHS HHS U48/CCU419249PHS HHS U48/CCU519239PHS HHS U48/CCU819241E3PHS HHS U48/CCU919219PHS HHS U58/CCU019235-4PHS HHS U58CCU919256
6 · The paper itself

Abstract

Autoimmune thyroid diseases (AITD) and Type 1 diabetes (T1D) frequently occur in the same individual pointing to a strong shared genetic susceptibility. Indeed, the co-occurrence of T1D and AITD in the same individual is classified as a variant of the autoimmune polyglandular syndrome type 3 (designated APS3v). Our aim was to identify new genes and mechanisms causing the co-occurrence of T1D + AITD (APS3v) in the same individual using a genome-wide approach. For our discovery set we analyzed 346 Caucasian APS3v patients and 727 gender and ethnicity matched healthy controls. Genotyping was performed using the Illumina Human660W-Quad.v1. The replication set included 185 APS3v patients and 340 controls. Association analyses were performed using the PLINK program, and pathway analyses were performed using the MAGENTA software. We identified multiple signals within the HLA region and conditioning studies suggested that a few of them contributed independently to the strong association of the HLA locus with APS3v. Outside the HLA region, variants in GPR103, a gene not suggested by previous studies of APS3v, T1D, or AITD, showed genome-wide significance (p < 5 × 10(-8)). In addition, a locus on 1p13 containing the PTPN22 gene showed genome-wide significant associations. Pathway analysis demonstrated that cell cycle, B-cell development, CD40, and CTLA-4 signaling were the major pathways contributing to the pathogenesis of APS3v. These findings suggest that complex mechanisms involving T-cell and B-cell pathways are involved in the strong genetic association between AITD and T1D.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyB-LymphocytesCD40 AntigensCTLA-4 AntigenDiabetes Mellitus, Type 1Histocompatibility Antigens Class IHistocompatibility Antigens Class IIHumansLinkage DisequilibriumPolyendocrinopathies, AutoimmuneProtein Tyrosine Phosphatase, Non-Receptor Type 22Thyroiditis, AutoimmuneT-LymphocytesCD40 AntigensCTLA-4 AntigenHistocompatibility Antigens Class IHistocompatibility Antigens Class IIProtein Tyrosine Phosphatase, Non-Receptor Type 22PTPN22 protein, humanGeneGraves' diseaseHashimoto's thyroiditisHLAType 1 diabetes

Identifiers

PMID25936594
PMCPMC4457545
OpenAlexW1968869945

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.