Evidence map›Paper›PMID 25935304›Full record

ArticleJournal of microbiology (Seoul, Korea)2015

Identification of seven novel virulence genes from Xanthomonas citri subsp. citri by Tn5-based random mutagenesis.

Xue Song, Jing Guo, Wen-xiu Ma, Zhi-yuan Ji, Li-fang Zou, Gong-you Chen, Hua-song Zou

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. eLife · 2024
    Article
  3. Review
  4. Article
  5. ThePathogens (Basel, Switzerland) · 2021
    Article
  6. Article
  7. Article
  8. Tn5 Transposase Applied in Genomics Research.International journal of molecular sciences · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. TheFrontiers in microbiology · 2018
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Xue SongSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
Jing Guo
Wen-xiu Ma
Zhi-yuan Ji
Li-fang Zou
Gong-you Chen
Hua-song Zou
Shanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To identify novel virulence genes, a mutant library of Xanthomonas citri subsp. citri 29-1 was produced using EZ-Tn5 transposon and the mutants were inoculated into susceptible grapefruit. Forty mutants with altered virulence phenotypes were identified. Nine of the mutants showed a complete loss of citrus canker induction, and the other 31 mutants resulted in attenuated canker symptoms. Southern blot analysis revealed that each of the mutants carried a single copy of Tn5. The flanking sequence was identified by plasmid rescue and 18 different ORFs were identified in the genome sequence. Of these 18 ORFs, seven had not been previously associated with the virulence of X. citri subsp. citri and were therefore confirmed by complementation analysis. Real-time PCR analysis showed that the seven genes were upregulated when the bacteria were grown in citrus plants, suggesting that the expression of these genes was essential for canker development.

Indexed as

DNA Transposable ElementsCitrus paradisiGene LibraryMutagenesis, InsertionalMutationOpen Reading FramesPhenotypePlant DiseasesPlant LeavesReal-Time Polymerase Chain ReactionUp-RegulationVirulenceXanthomonasDNA Transposable Elements

Identifiers

PMID25935304
OpenAlexW2056499487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.