Evidence map›Paper›PMID 25934504›Full record

ArticleGenes & development2015

Gender-specific postnatal demethylation and establishment of epigenetic memory.

Yitzhak Reizel, Adam Spiro, Ofra Sabag, Yael Skversky, Merav Hecht, Ilana Keshet, Benjamin P Berman, Howard Cedar

Abstract read
In one paragraph

Article in Genes & development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

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  13. Oromandibular dystonia: from onset to spread a multicenter italian study.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2024
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5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yitzhak ReizelDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, Jerusalem 91120, Israel;
Adam SpiroDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel;
Ofra SabagDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, Jerusalem 91120, Israel;
Yael SkverskyDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, Jerusalem 91120, Israel;
Merav HechtDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, Jerusalem 91120, Israel;
Ilana KeshetDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, Jerusalem 91120, Israel;
Benjamin P BermanBioinformatics and Computational Biology Research Center, Cedars-Sinai Medical Center, Los Angeles, California 90048, USA.
Howard CedarDepartment of Developmental Biology and Cancer Research, Hebrew University Medical School, Jerusalem 91120, Israel; cedar@mail.huji.ac.il.

Funding

Statistical Analysis of Epigenomics DataR01HG006705 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI SIEGMUND, KIMBERLY D · 2013 to 2015
$1.1M
6 · The paper itself

Abstract

DNA methylation patterns are set up in a relatively fixed programmed manner during normal embryonic development and are then stably maintained. Using genome-wide analysis, we discovered a postnatal pathway involving gender-specific demethylation that occurs exclusively in the male liver. This demodification is programmed to take place at tissue-specific enhancer sequences, and our data show that the methylation state at these loci is associated with and appears to play a role in the transcriptional regulation of nearby genes. This process is mediated by the secretion of testosterone at the time of sexual maturity, but the resulting methylation profile is stable and therefore can serve as an epigenetic memory even in the absence of this inducer. These findings add a new dimension to our understanding of the role of DNA methylation in vivo and provide the foundations for deciphering how environment can impact on the epigenetic regulation of genes in general.

Indexed as

DNA MethylationAndrogensAnimalsCastrationEnhancer Elements, GeneticEpigenesis, GeneticFemaleGene Expression Regulation, DevelopmentalGenome-Wide Association StudyHistonesHumansLiverMaleMiceMice, Inbred C57BLSex CharacteristicsAndrogensHistonesTestosteroneDNA methylationepigenetic memorygender-specific genesgene expressionliver

Identifiers

PMID25934504
PMCPMC4421981

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.