Evidence map›Paper›PMID 25934501›Full record

ReviewGenes & development2015

The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site.

Yongsheng Shi, James L Manley

Abstract readReview
In one paragraph

Review in Genes & development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 171 papers.

0numbers the graph read from it
0cells of the map it votes in
171citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

171 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Role of mRNA Alternative Processing in Mammalian Neurodevelopment.International journal of molecular sciences · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Reduced Usage ofPhenomics (Cham, Switzerland) · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. ThrScience advances · 2024
    Article
  20. Article

111 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yongsheng ShiDepartment of Microbiology and Molecular Genetics, School of Medicine, University of California at Irvine, Irvine, California 92697, USA; jlm2@columbia.edu yongshes@uci.edu.
James L ManleyDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA jlm2@columbia.edu yongshes@uci.edu.

Funding

MRNA SYTHESIS IN ANIMAL CELLS--3END FORMATIONR01GM028983 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MANLEY, JAMES L. · 1985 to 2014
$6.4M
Characterization of the mammalian mRNA-3'-end processing complexR01GM090056 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI SHI, YONGSHENG · 2010 to 2022
$4.2M
Coordinated regulation of alternative pre-mRNA processing in colon cancerR01CA177651 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDWARDS, ROBERT ANDREW, HERTEL, KLEMENS J · 2014 to 2018
$2.4M
HSRD VA CDP 12-186NCI NIH HHS CA177651NCI NIH HHS R01 CA177651NIGMS NIH HHS GM090056NIGMS NIH HHS GM28983NIGMS NIH HHS R01 GM028983NIGMS NIH HHS R01 GM090056
6 · The paper itself

Abstract

The key RNA sequence elements and protein factors necessary for 3' processing of polyadenylated mRNA precursors are well known. Recent studies, however, have significantly reshaped current models for the protein-RNA interactions involved in poly(A) site recognition, painting a picture more complex than previously envisioned and also providing new insights into regulation of this important step in gene expression. Here we review the recent advances in this area and provide a perspective for future studies.

Indexed as

Gene Expression RegulationAmino Acid MotifsCleavage And Polyadenylation Specificity FactorConserved SequencePolyadenylationProtein BindingRNA, MessengerRNA PrecursorsCleavage And Polyadenylation Specificity FactorRNA, MessengerRNA Precursorsgene expressionmRNA processingpoly(A) site recognition

Identifiers

PMID25934501
PMCPMC4421977

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.