Evidence map›Paper›PMID 25934124›Full record

ReviewFEMS microbiology reviews2015

Target activation by regulatory RNAs in bacteria.

Kai Papenfort, Carin K Vanderpool

Open access · bronzeAbstract readReview
In one paragraph

Review in FEMS microbiology reviews, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed
23.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 209 citations in OpenAlex.

  1. Article
  2. Article
  3. Bacterial small regulatory RNAs.Nature reviews. Microbiology · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Deletion of sRNA0024 Reduces Virulence ofAnimals : an open access journal from MDPI · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Linking Virulence and Iron Limitation Response inJournal of proteome research · 2025
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Small RNA OxyS induces resistance to aminoglycosides during oxidative stress by controlling Fe-S cluster biogenesis inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Article
  19. Article
  20. Article

66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Kai PapenfortDepartment of Molecular Biology, Princeton University, Princeton, NJ 08540, USA Department of Biology I, Ludwig-Maximilians-University Munich, 82152 Martinsried, Germany kai.papenfort@lmu.de.
Carin K VanderpoolDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Princeton University · USUniversity of Illinois Urbana-Champaign · US

Funding

Molecular Determinants of Regulatory Hierarchy for Bacterial Small RNAsR01GM092830 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI VANDERPOOL, CARIN K · 2010 to 2020
$2.8M
NIGMS NIH HHS R01 GM092830
6 · The paper itself

Abstract

Bacterial small regulatory RNAs (sRNAs) are commonly known to repress gene expression by base pairing to target mRNAs. In many cases, sRNAs base pair with and sequester mRNA ribosome-binding sites, resulting in translational repression and accelerated transcript decay. In contrast, a growing number of examples of translational activation and mRNA stabilization by sRNAs have now been documented. A given sRNA often employs a conserved region to interact with and regulate both repressed and activated targets. However, the mechanisms underlying activation differ substantially from repression. Base pairing resulting in target activation can involve sRNA interactions with the 5(') untranslated region (UTR), the coding sequence or the 3(') UTR of the target mRNAs. Frequently, the activities of protein factors such as cellular ribonucleases and the RNA chaperone Hfq are required for activation. Bacterial sRNAs, including those that function as activators, frequently control stress response pathways or virulence-associated functions required for immediate responses to changing environments. This review aims to summarize recent advances in knowledge regarding target mRNA activation by bacterial sRNAs, highlighting the molecular mechanisms and biological relevance of regulation.

Indexed as

Gene Expression Regulation, BacterialBacterial Physiological PhenomenaHost Factor 1 ProteinRibonucleasesRNA, BacterialRNA, MessengerRNA, Small UntranslatedHost Factor 1 ProteinRibonucleasesRNA, BacterialRNA, MessengerRNA, Small Untranslatedanti-antisensedegradation interferenceHfqRNase Esponge RNAsRNA

Identifiers

PMID25934124
PMCPMC4542691
OpenAlexW2111508981

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.