Evidence map›Paper›PMID 25933162›Full record

ArticlePloS one2015

Short LOV Proteins in Methylocystis Reveal Insight into LOV Domain Photocycle Mechanisms.

Kaley K El-Arab, Ashutosh Pudasaini, Brian D Zoltowski

Open access · goldAbstract read
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Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kaley K El-ArabDepartment of Chemistry, Center for Drug Discovery, Design and Delivery, Southern Methodist University, Dallas, Texas, United States of America.
Ashutosh PudasainiDepartment of Chemistry, Center for Drug Discovery, Design and Delivery, Southern Methodist University, Dallas, Texas, United States of America.
Brian D ZoltowskiDepartment of Chemistry, Center for Drug Discovery, Design and Delivery, Southern Methodist University, Dallas, Texas, United States of America.
Southern Methodist University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Light Oxygen Voltage (LOV) proteins are widely used in optogenetic devices, however universal signal transduction pathways and photocycle mechanisms remain elusive. In particular, short-LOV (sLOV) proteins have been discovered in bacteria and fungi, containing only the photoresponsive LOV element without any obvious signal transduction domains. These sLOV proteins may be ideal models for LOV domain function due to their ease of study as full-length proteins. Unfortunately, characterization of such proteins remains limited to select systems. Herein, we identify a family of bacterial sLOV proteins present in Methylocystis. Sequence analysis of Methylocystis LOV proteins (McLOV) demonstrates conservation with sLOV proteins from fungal systems that employ competitive dimerization as a signaling mechanism. Cloning and characterization of McLOV proteins confirms functional dimer formation and reveal unexpected photocycle mechanisms. Specifically, some McLOV photocycles are insensitive to external bases such as imidazole, in contrast to previously characterized LOV proteins. Mutational analysis identifies a key residue that imparts insensitivity to imidazole in two McLOV homologs and affects adduct decay by two orders of magnitude. The resultant data identifies a new family of LOV proteins that indicate a universal photocycle mechanism may not be present in LOV proteins.

Indexed as

Photochemical ProcessesAmino Acid SequenceBacterial ProteinsBiocatalysisEntropyKineticsMethylocystaceaeMolecular Sequence DataProtein MultimerizationProtein Structure, TertiaryTemperatureBacterial Proteins

Identifiers

PMID25933162
PMCPMC4416707
OpenAlexW2113391595

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.