Evidence map›Paper›PMID 25932023›Full record

ArticleFrontiers in microbiology2015

Bacterial community of cushion plant Thylacospermum ceaspitosum on elevational gradient in the Himalayan cold desert.

Klára Řeháková, Alica Chroňáková, Václav Krištůfek, Barbora Kuchtová, Kateřina Čapková, Josef Scharfen, Petr Čapek, Jiří Doležal

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Biodiversity in mountain soils above the treeline.Biological reviews of the Cambridge Philosophical Society · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Klára ŘehákováDepartment of Phycology, Ecology, Institute of Botany Academy of Sciences of the Czech Republic, v. v. i. Třeboň, Czech Republic ; Department of Microbial Water Ecology, Biology Centre Academy of Sciences of the Czech Republic, v. v. i - Institute of Hydrobiology Ceske Budejovice, Czech Republic.
Alica ChroňákováDepartment of Soil Microbiology and Soil Chemistry, Biology Centre Academy of Sciences of the Czech Republic, v. v. i - Institute of Soil Biology České Budějovice, Czech Republic.
Václav KrištůfekDepartment of Soil Microbiology and Soil Chemistry, Biology Centre Academy of Sciences of the Czech Republic, v. v. i - Institute of Soil Biology České Budějovice, Czech Republic.
Barbora KuchtováDepartment of Soil Microbiology and Soil Chemistry, Biology Centre Academy of Sciences of the Czech Republic, v. v. i - Institute of Soil Biology České Budějovice, Czech Republic.
Kateřina ČapkováDepartment of Phycology, Ecology, Institute of Botany Academy of Sciences of the Czech Republic, v. v. i. Třeboň, Czech Republic ; Department of Botany, Faculty of Science, University of South Bohemia České Budějovice, Czech Republic.
Josef ScharfenFaculty Hospital and Faculty of Medicine, Institute of Clinical Microbiology, Charles University Hradec Králové, Czech Republic ; National Reference Laboratory for Pathogenic Actinomycetes, Department of Medical Microbiology and Immunology, Regional Hospital Trutnov, Inc. Trutnov, Czech Republic.
Petr ČapekDepartment of Botany, Faculty of Science, University of South Bohemia České Budějovice, Czech Republic.
Jiří DoležalDepartment of Phycology, Ecology, Institute of Botany Academy of Sciences of the Czech Republic, v. v. i. Třeboň, Czech Republic ; Department of Botany, Faculty of Science, University of South Bohemia České Budějovice, Czech Republic.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although bacterial assemblages are important components of soils in arid ecosystems, the knowledge about composition, life-strategies, and environmental drivers is still fragmentary, especially in remote high-elevation mountains. We compared the quality and quantity of heterotrophic bacterial assemblages between the rhizosphere of the dominant cushion-forming plant Thylacospermum ceaspitosum and its surrounding bulk soil in two mountain ranges (East Karakoram: 4850-5250 m and Little Tibet: 5350-5850 m), in communities from cold steppes to the subnival zone in Ladakh, arid Trans-Himalaya, northwest India. Bacterial communities were characterized by molecular fingerprinting in combination with culture-dependent methods. The effects of environmental factors (elevation, mountain range, and soil physico-chemical parameters) on the bacterial community composition and structure were tested by multivariate redundancy analysis and conditional inference trees. Actinobacteria dominate the cultivable part of community and represent a major bacterial lineage of cold desert soils. The most abundant genera were Streptomyces, Arthrobacter, and Paenibacillus, representing both r- and K-strategists. The soil texture is the most important factor for the community structure and the total bacteria counts. Less abundant and diverse assemblages are found in East Karakoram with coarser soils derived from leucogranite bedrock, while more diverse assemblages in Little Tibet are associated with finer soils derived from easily weathering gneisses. Cushion rhizosphere is in general less diverse than bulk soil, and contains more r-strategists. K-strategists are more associated with the extremes of the gradient, with drought at lowest elevations (4850-5000 m) and frost at the highest elevations (5750-5850 m). The present study illuminates the composition of soil bacterial assemblages in relation to the cushion plant T. ceaspitosum in a xeric environment and brings important information about heterotrophic bacteria in Himalayan soil.

Indexed as

heterotrophic microbial communityHimalayasLadakhlife strategymountainssubnival soil

Identifiers

PMID25932023
PMCPMC4399334

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.