ArticleJournal of plant research2015
Analysis of phylogenetic and functional diverge in plant nine-cis epoxycarotenoid dioxygenase gene family.
Article in Journal of plant research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 46 citations in OpenAlex.
- Identification, Cloning, and Functional Characterization of Carotenoid Cleavage Dioxygenase (CCD) fromBiology · 2025Article
- An ABA biosynthesis enzyme gene OsNCED4 regulates NaCl and cold stress tolerance in rice.Scientific reports · 2024Article
- Unveiling the crucial roles of abscisic acid in plant physiology: implications for enhancing stress tolerance and productivity.Frontiers in plant science · 2024Review
- Genome-Wide Identification and Expression Analysis of NCED Gene Family in Pear and Its Response to Exogenous Gibberellin and Paclobutrazol.International journal of molecular sciences · 2023Article
- Article
- Jasmonate Positively Regulates Cold Tolerance by Promoting ABA Biosynthesis in Tomato.Plants (Basel, Switzerland) · 2022Article
- Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role ofPlants (Basel, Switzerland) · 2022Article
- Mild and severe salt stress responses are age-dependently regulated by abscisic acid in tomato.Frontiers in plant science · 2022Article
- Aethionema arabicum genome annotation using PacBio full-length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research.The Plant journal : for cell and molecular biology · 2021Article
- Genome-wide identification and expression analysis of the NCED family in cotton (Gossypium hirsutum L.).PloS one · 2021Article
- Promoted ABA Hydroxylation byFrontiers in plant science · 2020Article
- Unleashing the Synthetic Power of Plant Oxygenases: From Mechanism to Application.Plant physiology · 2019Review
- 9-Frontiers in plant science · 2018Article
- Transcriptome Analysis of the Effects of Shell Removal and Exogenous Gibberellin on Germination of Zanthoxylum Seeds.Scientific reports · 2017Article
- Bioinformatic and expression analyses on carotenoid dioxygenase genes in fruit development and abiotic stress responses in Fragaria vesca.Molecular genetics and genomics : MGG · 2017Article
- UFGT: The Key Enzyme Associated with the Petals Variegation in Japanese Apricot.Frontiers in plant science · 2017Article
- Carotenoid Cleavage Oxygenases from Microbes and Photosynthetic Organisms: Features and Functions.International journal of molecular sciences · 2016Review
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
During different environmental stress conditions, plant growth is regulated by the hormone abscisic acid (an apocarotenoid). In the biosynthesis of abscisic acid, the oxidative cleavage of cis-epoxycarotenoid catalyzed by 9-cis-epoxycarotenoid dioxygenase (NCED) is the crucial step. The NCED genes were isolated in numerous plant species and those genes were phylogenetically investigated to understand the evolution of NCED genes in various plant lineages comprising lycophyte, gymnosperm, dicot and monocot. A total of 93 genes were obtained from 48 plant species to statistically estimate their sequence conservation and functional divergence. Selaginella moellendorffii appeared to be evolutionarily distinct from those of the angiosperms, insisting the substantial influence of natural selection pressure on NCED genes. Further, using exon-intron structure analysis, the gene structures of NCED were found to be conserved across some species. In addition, the substitution rate ratio of non-synonymous (Ka) versus synonymous (Ks) mutations using the Bayesian inference approach, depicted the critical amino acid residues for functional divergence. A significant functional divergence was found between some subgroups through the co-efficient of type-I functional divergence. Our results suggest that the evolution of NCED genes occurred by duplication, diversification and exon intron loss events. The site-specific profile and functional diverge analysis revealed NCED genes might facilitate the tissue-specific functional divergence in NCED sub-families, that could combat different environmental stress conditions aiding plant survival.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.