Evidence map›Paper›PMID 25928281›Full record

ArticleBiochemistry2015

Role of domain swapping in the hetero-oligomeric cytochrome b6f lipoprotein complex.

Rachna Agarwal, S Saif Hasan, LaDonna M Jones, Jason T Stofleth, Christopher M Ryan, Julian P Whitelegge, David M Kehoe, William A Cramer

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. OsRNase ZPlant communications · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Structure-function of the cytochrome bPhotosynthesis research · 2019
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Rachna Agarwal†Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, United States.
S Saif Hasan†Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, United States.
LaDonna M Jones‡Department of Biology, Indiana University, Bloomington, Indiana 47405, United States.
Jason T Stofleth†Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, United States.
Christopher M Ryan§Pasarow Mass Spectrometry Laboratory, NPI-Semel Institute, University of California, Los Angeles, California 90095, United States.
Julian P Whitelegge§Pasarow Mass Spectrometry Laboratory, NPI-Semel Institute, University of California, Los Angeles, California 90095, United States.
David M Kehoe‡Department of Biology, Indiana University, Bloomington, Indiana 47405, United States.
William A Cramer†Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, United States.
Purdue University West Lafayette · USIndiana University Bloomington · USUniversity of California, Los Angeles · US

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI Andrea L Kasinski · 1985 to 2026
$43.4M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Andrea L Hevener · 2003 to 2026
$40.4M
Trans-Membrane Signaling in the Cytochrome b6f Lipoprotein ComplexR01GM038323 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI CRAMER, WILLIAM A. · 1987 to 2017
$5.1M
Structure-Function of Hetero-oligomeric Integral Membrane ProteinsR56GM038323 · NIGMS · PURDUE UNIVERSITY · PI CRAMER, WILLIAM A. · 2007 to 2007
$336k
NCI NIH HHS P30 CA023168NIDDK NIH HHS P30 DK063491NIGMS NIH HHS GM-038323NIGMS NIH HHS R01 GM038323NIGMS NIH HHS R56 GM038323
6 · The paper itself

Abstract

Domain swapping that contributes to the stability of biologically crucial multisubunit complexes has been implicated in protein oligomerization. In the case of membrane protein assemblies, domain swapping of the iron-sulfur protein (ISP) subunit occurs in the hetero-oligomeric cytochrome b6f and bc1 complexes, which are organized as symmetric dimers that generate the transmembrane proton electrochemical gradient utilized for ATP synthesis. In these complexes, the ISP C-terminal predominantly β-sheet extrinsic domain containing the redox-active [2Fe-2S] cluster resides on the electrochemically positive side of each monomer in the dimeric complex. This domain is bound to the membrane sector of the complex through an N-terminal transmembrane α-helix that is "swapped' to the other monomer of the complex where it spans the complex and the membrane. Detailed analysis of the function and structure of the b6f complex isolated from the cyanobacterium Fremyella diplosiphon SF33 shows that the domain-swapped ISP structure is necessary for function but is not necessarily essential for maintenance of the dimeric structure of the complex. On the basis of crystal structures of the cytochrome complex, the stability of the cytochrome dimer is attributed to specific intermonomer protein-protein and protein-lipid hydrophobic interactions. The geometry of the domain-swapped ISP structure is proposed to be a consequence of the requirement that the anchoring helix of the ISP not perturb the heme organization or quinone channel in the conserved core of each monomer.

Indexed as

CyanobacteriaBacterial ProteinsCytochromes b6LipoproteinsModels, MolecularProtein Interaction Domains and MotifsProtein Structure, SecondaryBacterial ProteinsCytochromes b6Lipoproteins

Identifiers

PMID25928281
PMCPMC4672631
OpenAlexW2004859221

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.