Evidence map›Paper›PMID 25928250›Full record

ArticleGenetics, selection, evolution : GSE2015

Low levels of taurine introgression in the current Brazilian Nelore and Gir indicine cattle populations.

Ana M Perez O'Brien, Daniela Höller, Solomon A Boison, Marco Milanesi, Lorenzo Bomba, Yuri T Utsunomiya, Roberto Carvalheiro, Haroldo H R Neves, Marcos V B da Silva, Curtis P VanTassell and 5 more

Open access · goldAbstract read
In one paragraph

Article in Genetics, selection, evolution : GSE, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 4 countries.

Ana M Perez O'BrienDepartment of Sustainable Agricultural Systems, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria. anita_op@hotmail.com.
Daniela HöllerDepartment of Sustainable Agricultural Systems, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria. daniela.hoeller@aon.at.
Solomon A BoisonDepartment of Sustainable Agricultural Systems, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria. solomon.boison@students.boku.ac.at.
Marco MilanesiUniversità Cattolica del Sacro Cuore di Piacenza, Institute of Zootechnica and Biodiversity and Ancient DNA Research Center - BioDNA, Piacenza, Italy. marco.milanesi@unicatt.it.
Lorenzo BombaUniversità Cattolica del Sacro Cuore di Piacenza, Institute of Zootechnica and Biodiversity and Ancient DNA Research Center - BioDNA, Piacenza, Italy. lorenzo.bomba@unicatt.it.
Yuri T UtsunomiyaUniversidade Estadual Paulista (UNESP), Faculdade de Ciências Agrária e Veterinárias, Jaboticabal, SP, Brazil. ytutsunomiya@gmail.com.
Roberto CarvalheiroUniversidade Estadual Paulista (UNESP), Faculdade de Ciências Agrária e Veterinárias, Jaboticabal, SP, Brazil. rcar@fcav.unesp.br.
Haroldo H R NevesUniversidade Estadual Paulista (UNESP), Faculdade de Ciências Agrária e Veterinárias, Jaboticabal, SP, Brazil. haroldozoo@hotmail.com.
Marcos V B da SilvaEmpresa Brasileira de Pesquisa Agropecuária - Embrapa Gado de Leite, Juiz de Fora, MG, Brazil. marcos.vb.silva@embrapa.br.
Curtis P VanTassellUnited States Department of Agriculture - Agricultural Research Service, Bovine Functional Genomics Laboratory, Beltsville, MD, USA. curt.vantassell@ars.usda.gov.
Tad S SonstegardUnited States Department of Agriculture - Agricultural Research Service, Bovine Functional Genomics Laboratory, Beltsville, MD, USA. tad.sonstegard@ars.usda.gov.
Gábor MészárosDepartment of Sustainable Agricultural Systems, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria. gabor.meszaros@boku.ac.at.
Paolo Ajmone-MarsanUniversità Cattolica del Sacro Cuore di Piacenza, Institute of Zootechnica and Biodiversity and Ancient DNA Research Center - BioDNA, Piacenza, Italy. paolo.ajmone@unicatt.it.
Fernando GarciaUniversidade Estadual Paulista (UNESP), Faculdade de Ciências Agrária e Veterinárias, Jaboticabal, SP, Brazil. jfgarcia@fmva.unesp.br.
Johann SölknerDepartment of Sustainable Agricultural Systems, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria. johann.soelkner@boku.ac.at.
BOKU University · ATUniversidade Estadual Paulista (Unesp) · BRUniversità Cattolica del Sacro Cuore · ITAgricultural Research Service · USBrazilian Agricultural Research Corporation · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNelore and Gir are the two most important indicine cattle breeds for production of beef and milk in Brazil. Historical records state that these breeds were introduced in Brazil from the Indian subcontinent, crossed to local taurine cattle in order to quickly increase the population size, and then backcrossed to the original breeds to recover indicine adaptive and productive traits. Previous investigations based on sparse DNA markers detected taurine admixture in these breeds. High-density genome-wide analyses can provide high-resolution information on the genetic composition of current Nelore and Gir populations, estimate more precisely the levels and nature of taurine introgression, and shed light on their history and the strategies that were used to expand these breeds.

resultsWe used the high-density Illumina BovineHD BeadChip with more than 777 K single nucleotide polymorphisms (SNPs) that were reduced to 697 115 after quality control filtering to investigate the structure of Nelore and Gir populations and seven other worldwide populations for comparison. Multidimensional scaling and model-based ancestry estimation clearly separated the indicine, European taurine and African taurine ancestries. The average level of taurine introgression in the autosomal genome of Nelore and Gir breeds was less than 1% but was 9% for the Brahman breed. Analyses based on the mitochondrial SNPs present in the Illumina BovineHD BeadChip did not clearly differentiate taurine and indicine haplotype groupings.

conclusionsThe low level of taurine ancestry observed for both Nelore and Gir breeds confirms the historical records of crossbreeding and supports a strong directional selection against taurine haplotypes via backcrossing. Random sampling in production herds across the country and subsequent genotyping would be useful for a more complete view of the admixture levels in the commercial Nelore and Gir populations.

Indexed as

AnimalsBrazilBreedingCattleGenotypeHaplotypesMitochondriaPolymorphism, Single Nucleotide

Identifiers

PMID25928250
PMCPMC4404172
OpenAlexW2139246903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.