Evidence map›Paper›PMID 25927548›Full record

ArticleBMC medical genetics2015

An atypical form of AOA2 with myoclonus associated with mutations in SETX and AFG3L2.

Cecilia Mancini, Laura Orsi, Yiran Guo, Jiankang Li, Yulan Chen, Fengxiang Wang, Lifeng Tian, Xuanzhu Liu, Jianguo Zhang, Hui Jiang and 15 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC medical genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Myoclonus-Ataxia Syndromes: A Diagnostic Approach.Movement disorders clinical practice · 2021
    Review
  5. Article
  6. Article
  7. R-Loops in Motor Neuron Diseases.Molecular neurobiology · 2019
    Review
  8. R Loops and Links to Human Disease.Journal of molecular biology · 2017
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 4 countries.

Cecilia ManciniDepartment of Medical Sciences, University of Torino, via Santena 19, 10126, Torino, Italy. cecilia.mancini@unito.it.
Laura OrsiStruttura Complessa Neurologia I, Department of Neuroscience and Mental Health, Città della Salute e della Scienza University Hospital, Torino, 10126, Italy. lorsi@cittadellasalute.to.it.
Yiran GuoCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA. guoy@email.chop.edu.
Jiankang LiBGI-Shenzhen, Shenzhen, 510803, China. lijiankang@genomics.cn.
Yulan ChenBGI-Shenzhen, Shenzhen, 510803, China. shenyulan@genomics.cn.
Fengxiang WangCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA. wangf@email.chop.edu.
Lifeng TianCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA. tianl@email.chop.edu.
Xuanzhu LiuBGI-Shenzhen, Shenzhen, 510803, China. liuxuanzhu@genomics.cn.
Jianguo ZhangBGI-Shenzhen, Shenzhen, 510803, China. zhangjg@genomics.cn.
Hui JiangBGI-Shenzhen, Shenzhen, 510803, China. jianghui@genomics.cn.
Bruce Shike NmeziDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, 15261, USA. bcn6@pitt.edu.
Takashi TatsutaInstitute for Genetics, Center for Molecular Medicine (CMMC), Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, 50931, Germany. t.tatsuta@uni-koeln.de.
Elisa GiorgioDepartment of Medical Sciences, University of Torino, via Santena 19, 10126, Torino, Italy. elisa.giorgio84@libero.it.
Eleonora Di GregorioMedical Genetics Unit, Città della Salute e della Scienza University Hospital, Torino, 10126, Italy. eleonora.digregorio@unito.it.
Simona CavalieriMedical Genetics Unit, Città della Salute e della Scienza University Hospital, Torino, 10126, Italy. scavalieri@gmail.com.
Elisa PozziDepartment of Medical Sciences, University of Torino, via Santena 19, 10126, Torino, Italy. elisa.pozzi@unito.it.
Paolo MortaraStruttura Complessa Neurologia I, Department of Neuroscience and Mental Health, Città della Salute e della Scienza University Hospital, Torino, 10126, Italy. paolo.mortara@unito.it.
Maria Marcella CaglioDepartment of Neuroscience, University of Torino, Torino, 10126, Italy. marcella.caglio@unito.it.
Alessandro BalducciDepartment of Neuroscience, University of Torino, Torino, 10126, Italy. alessandro.balducci@unito.it.
Lorenzo PinessiStruttura Complessa Neurologia I, Department of Neuroscience and Mental Health, Città della Salute e della Scienza University Hospital, Torino, 10126, Italy. lorenzo.pinessi@unito.it.
Thomas LangerInstitute for Genetics, Center for Molecular Medicine (CMMC), Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, 50931, Germany. thomas.langer@uni-koeln.de.
Quasar S PadiathDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, 15261, USA. qpadiath@pitt.edu.
Hakon HakonarsonCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA. hakonarson@email.chop.edu.
Xiuqing ZhangBGI-Shenzhen, Shenzhen, 510803, China. zhangxq@genomics.cn.
Alfredo BruscoDepartment of Medical Sciences, University of Torino, via Santena 19, 10126, Torino, Italy. alfredo.brusco@unito.it.
University of Turin · ITBGI Group (China) · CNChildren's Hospital of Philadelphia · USAzienda Ospedaliera Citta' della Salute e della Scienza di Torino · ITCologne Excellence Cluster on Cellular Stress Responses in Aging Associated Diseases · DEUniversity of Pittsburgh · US

Funding

University of Pittsburgh Clinical and Translational Science InstituteUL1TR000005 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2012 to 2015
$50.8M
NCATS NIH HHS UL1 TR000005Telethon GGP12217
6 · The paper itself

Abstract

backgroundHereditary ataxias are a heterogeneous group of neurodegenerative disorders, where exome sequencing may become an important diagnostic tool to solve clinically or genetically complex cases.

methodsWe describe an Italian family in which three sisters were affected by ataxia with postural/intentional myoclonus and involuntary movements at onset, which persisted during the disease. Oculomotor apraxia was absent. Clinical and genetic data did not allow us to exclude autosomal dominant or recessive inheritance and suggest a disease gene.

resultsExome sequencing identified a homozygous c.6292C > T (p.Arg2098*) mutation in SETX and a heterozygous c.346G > A (p.Gly116Arg) mutation in AFG3L2 shared by all three affected individuals. A fourth sister (II.7) had subclinical myoclonic jerks at proximal upper limbs and perioral district, confirmed by electrophysiology, and carried the p.Gly116Arg change. Three siblings were healthy. Pathogenicity prediction and a yeast-functional assay suggested p.Gly116Arg impaired m-AAA (ATPases associated with various cellular activities) complex function.

conclusionsExome sequencing is a powerful tool in identifying disease genes. We identified an atypical form of Ataxia with Oculoapraxia type 2 (AOA2) with myoclonus at onset associated with the c.6292C > T (p.Arg2098*) homozygous mutation. Because the same genotype was described in six cases from a Tunisian family with a typical AOA2 without myoclonus, we speculate this latter feature is associated with a second mutated gene, namely AFG3L2 (p.Gly116Arg variant). We suggest that variant phenotypes may be due to the combined effect of different mutated genes associated to ataxia or related disorders, that will become more apparent as the costs of exome sequencing progressively will reduce, amplifying its diagnostics use, and meanwhile proposing significant challenges in the interpretation of the data.

Indexed as

MutationAdolescentAdultAmino Acid SequenceAnimalsATPases Associated with Diverse Cellular ActivitiesATP-Dependent ProteasesChildDNA HelicasesDNA Mutational AnalysisExomeFemaleHomozygoteHumansMolecular Sequence DataMultifunctional EnzymesAFG3L2 protein, humanATPases Associated with Diverse Cellular ActivitiesATP-Dependent ProteasesDNA HelicasesMultifunctional EnzymesRNA HelicasesSETX protein, human

Identifiers

PMID25927548
PMCPMC4422141
OpenAlexW1984790023

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.