Evidence map›Paper›PMID 25927359›Full record

ArticlePLoS pathogens2015

IFIT1 Differentially Interferes with Translation and Replication of Alphavirus Genomes and Promotes Induction of Type I Interferon.

Josephine M Reynaud, Dal Young Kim, Svetlana Atasheva, Aliaksandra Rasalouskaya, James P White, Michael S Diamond, Scott C Weaver, Elena I Frolova, Ilya Frolov

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
10.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 109 citations in OpenAlex.

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23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Josephine M ReynaudDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Dal Young KimDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Svetlana AtashevaDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Aliaksandra RasalouskayaDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
James P WhiteDepartment of Medicine, Washington University School of Medicine, Saint Louis, Missouri, United States of America.
Michael S DiamondDepartment of Medicine, Washington University School of Medicine, Saint Louis, Missouri, United States of America; Department of Pathology & Immunology, Washington University School of Medicine, Saint Louis, Missouri, United States of America; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Scott C WeaverInstitute for Human Infections and Immunity, University of Texas Medical Branch, Galveston, Texas, United States of America; Center for Tropical Diseases, University of Texas Medical Branch, Galveston, Texas, United States of America; Department of Pathology, University of Texas Medical Branch, Galveston, Texas, United States of America.
Elena I FrolovaDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Ilya FrolovDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
University of Alabama at Birmingham · USWashington University in St. Louis · USThe University of Texas Medical Branch at Galveston · US

Funding

Mechanism of alphavirus packaging: designing of pseudoinfectious virusesR01AI095449 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOV, ILYA V. · 2012 to 2016
$1.8M
The Molecular Basis of VEEV PathogenesisR01AI070207 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI FROLOV, ILYA V. · 2008 to 2012
$1.6M
Sindbis nonstructural protein nsP2: Interaction with cellular proteinsR01AI073301 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI FROLOVA, ELENA I · 2008 to 2012
$1.6M
Mechanism of IFIT-Mediated Antiviral EffectsF32AI112274 · NIAID · WASHINGTON UNIVERSITY · PI WHITE, JAMES P · 2015 to 2016
$116k
NIAID NIH HHS AI070207NIAID NIH HHS AI073301NIAID NIH HHS AI095449NIAID NIH HHS F32 AI112274NIAID NIH HHS R01 AI070207NIAID NIH HHS R01 AI073301NIAID NIH HHS R01 AI095449
6 · The paper itself

Abstract

Alphaviruses are a group of widely distributed human and animal pathogens. It is well established that their replication is sensitive to type I IFN treatment, but the mechanism of IFN inhibitory function remains poorly understood. Using a new experimental system, we demonstrate that in the presence of IFN-β, activation of interferon-stimulated genes (ISGs) does not interfere with either attachment of alphavirus virions to the cells, or their entry and nucleocapsid disassembly. However, it strongly affects translation of the virion-delivered virus-specific RNAs. One of the ISG products, IFIT1 protein, plays a major role in this translation block, although an IFIT1-independent mechanism is also involved. The 5'UTRs of the alphavirus genomes were found to differ significantly in their ability to drive translation in the presence of increased concentration of IFIT1. Prior studies have shown that adaptation of naturally circulating alphaviruses to replication in tissue culture results in accumulation of mutations in the 5'UTR, which increase the efficiency of the promoter located in the 5'end of the genome. Here, we show that these mutations also decrease resistance of viral RNA to IFIT1-induced translation inhibition. In the presence of higher levels of IFIT1, alphaviruses with wt 5'UTRs became potent inducers of type I IFN, suggesting a new mechanism of type I IFN induction. We applied this knowledge of IFIT1 interaction with alphaviruses to develop new attenuated variants of Venezuelan equine encephalitis and chikungunya viruses that are more sensitive to the antiviral effects of IFIT1, and thus could serve as novel vaccine candidates.

Indexed as

Gene Expression Regulation, ViralGenome, ViralHost-Pathogen InteractionsVirus Replication5' Untranslated RegionsAdaptor Proteins, Signal TransducingAedesAlphavirusAnimalsCarrier ProteinsCell LineCells, CulturedChikungunya virusDown-RegulationEncephalitis Virus, Venezuelan EquineFungal Vaccines5' Untranslated RegionsAdaptor Proteins, Signal TransducingCarrier ProteinsFungal VaccinesIfit1 protein, mouseInterferon Type IRNARNA-Binding ProteinsRNA, recombinant

Identifiers

PMID25927359
PMCPMC4415776
OpenAlexW2014176574

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.