Evidence map›Paper›PMID 25927202›Full record

ArticleBMC medical genetics2015

Targeted Next Generation Sequencing reveals previously unidentified TSC1 and TSC2 mutations.

Mark Nellist, Rutger W W Brouwer, Christel E M Kockx, Monique van Veghel-Plandsoen, Caroline Withagen-Hermans, Lida Prins-Bakker, Marianne Hoogeveen-Westerveld, Alan Mrsic, Mike M P van den Berg, Anna E Koopmans and 7 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 82 citations in OpenAlex.

  1. Pooled it
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  14. Targeted Genomic Sequencing ofHuman mutation · 2023
    Article
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  18. Identification of TSC2 mosaic mutation limited to cortical tuber with TSC targeted sequencing: a case report and literature review.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2021
    Review
  19. An Israeli tuberous sclerosis cohort: the efficacy of different anti-epileptic strategies.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Mark NellistDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. m.nellist@erasmusmc.nl.
Rutger W W BrouwerCenter for Biomics, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. r.w.w.brouwer@erasmusmc.nl.
Christel E M KockxCenter for Biomics, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. c.kockx@erasmusmc.nl.
Monique van Veghel-PlandsoenDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. m.plandsoen@erasmusmc.nl.
Caroline Withagen-HermansDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. c.hermans@erasmusmc.nl.
Lida Prins-BakkerDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. p.bakker@erasmusmc.nl.
Marianne Hoogeveen-WesterveldDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. m.hoogeveen-westerveld@erasmusmc.nl.
Alan MrsicDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. a.mrsic@erasmusmc.nl.
Mike M P van den BergDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. m.m.p.vandenberg@erasmusmc.nl.
Anna E KoopmansDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. a.koopmans@erasmusmc.nl.
Marie-Claire de WitDepartment of Neurology, Sophia Children's Hospital, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. m.c.y.dewit@erasmusmc.nl.
Floor E JansenDepartment of Pediatric Neurology, Brain Center Rudolf Magnus, University Medical Center Utrecht, 3508, Utrecht, EA, The Netherlands. f.e.jansen@umcutrecht.nl.
Anneke J A Maat-KievitDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. j.a.maat@erasmusmc.nl.
Ans van den OuwelandDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. a.vandenouweland@erasmusmc.nl.
Dicky HalleyDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. d.halley@erasmusmc.nl.
Annelies de KleinDepartment of Clinical Genetics, Ee-2426, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. a.deklein@erasmusmc.nl.
Wilfred F J van IJckenCenter for Biomics, Erasmus Medical Center, Wytemaweg 80, 3015, Rotterdam, CN, The Netherlands. w.vanijcken@erasmusmc.nl.
Erasmus MC · NLErasmus MC - Sophia Children’s Hospital · NLUniversity Medical Center Utrecht · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTuberous sclerosis complex (TSC) is an autosomal dominant disorder caused by mutations in TSC1 and TSC2. Conventional DNA diagnostic screens identify a TSC1 or TSC2 mutation in 75 - 90% of individuals categorised with definite TSC. The remaining individuals either have a mutation that is undetectable using conventional methods, or possibly a mutation in another as yet unidentified gene.

methodsHere we apply a targeted Next Generation Sequencing (NGS) approach to screen the complete TSC1 and TSC2 genomic loci in 7 individuals fulfilling the clinical diagnostic criteria for definite TSC in whom no TSC1 or TSC2 mutations were identified using conventional screening methods.

resultsWe identified and confirmed pathogenic mutations in 3 individuals. In the remaining individuals we identified variants of uncertain clinical significance. The identified variants included mosaic changes, changes located deep in intronic sequences and changes affecting promoter regions that would not have been identified using exon-only based analyses.

conclusionsTargeted NGS of the TSC1 and TSC2 loci is a suitable method to increase the yield of mutations identified in the TSC patient population.

Indexed as

DNA Mutational AnalysisHigh-Throughput Nucleotide SequencingMutationAdolescentChildGenetic LociGenomicsHumansMiddle AgedTuberous SclerosisTuberous Sclerosis Complex 1 ProteinTuberous Sclerosis Complex 2 ProteinTumor Suppressor ProteinsTSC1 protein, humanTSC2 protein, humanTuberous Sclerosis Complex 1 ProteinTuberous Sclerosis Complex 2 ProteinTumor Suppressor Proteins

Identifiers

PMID25927202
PMCPMC4422413
OpenAlexW2021453612

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.