Evidence map›Paper›PMID 25926491›Full record

ArticleJournal of clinical microbiology2015

Real-Time PCR Assay for Detection and Differentiation of Shiga Toxin-Producing Escherichia coli from Clinical Samples.

Xuan Qin, Eileen J Klein, Emmanouil Galanakis, Anita A Thomas, Jennifer R Stapp, Shannon Rich, Anne Marie Buccat, Phillip I Tarr

Open access · bronzeAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Detection and analysis of Shiga toxin producing and enteropathogenic Escherichia coli in cattle from Tierra del Fuego, Argentina.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
  4. Review
  5. Genome Sequence Analysis and Characterization of Shiga Toxin 2 Production byFrontiers in cellular and infection microbiology · 2022
    Article
  6. Point-of-care multiplex-PCR enables germ identification in haemolytic uremic syndrome 94 h earlier than stool culture.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2021
    Article
  7. Improved Genomic Identification, Clustering, and Serotyping of Shiga Toxin-ProducingFrontiers in cellular and infection microbiology · 2021
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
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  18. Article
  19. Evaluation of the BioFire FilmArray® GastrointestinalPanel in a Midwestern Academic Hospital.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Xuan QinMicrobiology Laboratory, Seattle Children's Hospital, Seattle, Washington, USA Department of Laboratory Medicine, University of Washington School of Medicine, Seattle, Washington, USA xuan.qin@seattlechildrens.org.
Eileen J KleinDepartment of Pediatrics, University of Washington School of Medicine, Seattle, Washington, USA.
Emmanouil GalanakisMicrobiology Laboratory, Seattle Children's Hospital, Seattle, Washington, USA.
Anita A ThomasDepartment of Pediatrics, University of Washington School of Medicine, Seattle, Washington, USA.
Jennifer R StappMicrobiology Laboratory, Seattle Children's Hospital, Seattle, Washington, USA.
Shannon RichMicrobiology Laboratory, Seattle Children's Hospital, Seattle, Washington, USA.
Anne Marie BuccatMicrobiology Laboratory, Seattle Children's Hospital, Seattle, Washington, USA.
Phillip I TarrDepartments of Pediatrics and Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, USA.
Seattle Children's Hospital · USUniversity of Washington · USWashington University in St. Louis · US

Funding

Washington University DDRCC Supplemental Equipment RequestP30DK052574 · NIDDK · WASHINGTON UNIVERSITY · PI Nicholas O. Davidson · 2000 to 2026
$30.8M
NIDDK NIH HHS P30 DK052574
6 · The paper itself

Abstract

Timely accurate diagnosis of Shiga toxin-producing Escherichia coli (STEC) infections is important. We evaluated a laboratory-developed real-time PCR (LD-PCR) assay targeting stx1, stx2, and rfbEO157 with 2,386 qualifying stool samples submitted to the microbiology laboratory of a tertiary care pediatric center between July 2011 and December 2013. Broth cultures of PCR-positive samples were tested for Shiga toxins by enzyme immunoassay (EIA) (ImmunoCard STAT! enterohemorrhagic E. coli [EHEC]; Meridian Bioscience) and cultured in attempts to recover both O157 and non-O157 STEC. E. coli O157 and non-O157 STEC were detected in 35 and 18 cases, respectively. Hemolytic uremic syndrome (HUS) occurred in 12 patients (10 infected with STEC O157, one infected with STEC O125ac, and one with PCR evidence of STEC but no resulting isolate). Among the 59 PCR-positive STEC specimens from 53 patients, only 29 (54.7%) of the associated specimens were toxin positive by EIA. LD-PCR differentiated STEC O157 from non-O157 using rfbEO157, and LD-PCR results prompted successful recovery of E. coli O157 (n = 25) and non-O157 STEC (n = 8) isolates, although the primary cultures and toxin assays were frequently negative. A rapid "mega"-multiplex PCR (FilmArray gastrointestinal panel; BioFire Diagnostics) was used retrospectively, and results correlated with LD-PCR findings in 25 (89%) of the 28 sorbitol-MacConkey agar culture-negative STEC cases. These findings demonstrate that PCR is more sensitive than EIA and/or culture and distinguishes between O157 and non-O157 STEC in clinical samples and that E. coli O157:H7 remains the predominant cause of HUS in our institution. PCR is highly recommended for rapid diagnosis of pediatric STEC infections.

Indexed as

Bacteriological TechniquesCarbohydrate EpimerasesChildChild, PreschoolEscherichia coli InfectionsFecesFemaleHospitals, PediatricHumansImmunoenzyme TechniquesInfantMaleMolecular Diagnostic TechniquesReal-Time Polymerase Chain ReactionRetrospective StudiesSensitivity and SpecificityCarbohydrate Epimerasesperosamine synthetaseShiga Toxin 1Shiga Toxin 2Transaminases

Identifiers

PMID25926491
PMCPMC4473226
OpenAlexW1966498355

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.