Evidence map›Paper›PMID 25925668›Full record

ArticleEMBO reports2015

Phosphorylation of the exchange factor DENND3 by ULK in response to starvation activates Rab12 and induces autophagy.

Jie Xu, Maryam Fotouhi, Peter S McPherson

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Rab12 is a regulator of mitophagy and mitochondrial homeostasis.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Organization of Presynaptic Autophagy-Related Processes.Frontiers in synaptic neuroscience · 2022
    Review
  13. Review
  14. Article
  15. Review
  16. Rab GTPases in Osteoclastic Bone Resorption and Autophagy.International journal of molecular sciences · 2020
    Review
  17. Review
  18. The key genes, phosphoproteins, processes, and pathways affected by efavirenz-activated CYP46A1 in the amyloid-decreasing paradigm of efavirenz treatment.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jie XuDepartment of Neurology and Neurosurgery, Montreal Neurological Institute McGill University, Montreal, Quebec H3A 2B4, Canada peter.mcpherson@mcgill.ca jie.xu3@mail.mcgill.ca.
Maryam FotouhiDepartment of Neurology and Neurosurgery, Montreal Neurological Institute McGill University, Montreal, Quebec H3A 2B4, Canada.
Peter S McPhersonDepartment of Neurology and Neurosurgery, Montreal Neurological Institute McGill University, Montreal, Quebec H3A 2B4, Canada peter.mcpherson@mcgill.ca jie.xu3@mail.mcgill.ca.
Montreal Neurological Institute and Hospital · CAMcGill University · CA

Funding

Canadian Institutes of Health Research MOP-62684
6 · The paper itself

Abstract

Unc-51-like kinases (ULKs) are the most upstream kinases in the initiation of autophagy, yet the molecular mechanisms underlying their function are poorly understood. We report a new role for ULK in the induction of autophagy. ULK-mediated phosphorylation of the guanine nucleotide exchange factor DENND3 at serines 554 and 572 upregulates its GEF activity toward the small GTPase Rab12. Through binding to LC3 and associating with LC3-positive autophagosomes, active Rab12 facilitates autophagosome trafficking, thus establishing a crucial role for the ULK/DENND3/Rab12 axis in starvation-induced autophagy.

Indexed as

AutophagyAutophagy-Related Protein-1 HomologGene Knockdown TechniquesGuanine Nucleotide Exchange FactorsHEK293 CellsHumansIntracellular Signaling Peptides and ProteinsPhagosomesPhosphorylationProtein Serine-Threonine KinasesProtein Transportrab GTP-Binding ProteinsRNA, Small InterferingAutophagy-Related Protein-1 HomologDENND3 protein, humanGuanine Nucleotide Exchange FactorsIntracellular Signaling Peptides and ProteinsProtein Serine-Threonine KinasesRab12 protein, humanrab GTP-Binding ProteinsRNA, Small InterferingULK1 protein, humanUlk2 protein, human14‐3‐3DENN domainGEFguanine nucleotide exchange factorLC3

Identifiers

PMID25925668
PMCPMC4467855
OpenAlexW2114673876

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.