Evidence map›Paper›PMID 25925567›Full record

ArticleNucleic acids research2015

Argonaute of the archaeon Pyrococcus furiosus is a DNA-guided nuclease that targets cognate DNA.

Daan C Swarts, Jorrit W Hegge, Ismael Hinojo, Masami Shiimori, Michael A Ellis, Justin Dumrongkulraksa, Rebecca M Terns, Michael P Terns, John van der Oost

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 317 citations in OpenAlex.

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91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Daan C SwartsLaboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6703 HB Wageningen, The Netherlands.ORCID http://orcid.org/0000-0003-4412-9191
Jorrit W HeggeLaboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6703 HB Wageningen, The Netherlands.
Ismael HinojoLaboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6703 HB Wageningen, The Netherlands.
Masami ShiimoriDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.
Michael A EllisDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.
Justin DumrongkulraksaDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.
Rebecca M TernsDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.
Michael P TernsDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.ORCID http://orcid.org/0000-0001-8330-1789
John van der OostLaboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6703 HB Wageningen, The Netherlands john.vanderoost@wur.nl.
University of Georgia · USWageningen University & Research · NL

Funding

Small RNA-based immunity by CRISPR-Cas complexes of Pyrococcus furiosusR01GM054682 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI TERNS, MICHAEL P, TERNS, REBECCA · 1997 to 2015
$4.8M
NIGMS NIH HHS R01 GM054682NIGMS NIH HHS R01 GM54682
6 · The paper itself

Abstract

Functions of prokaryotic Argonautes (pAgo) have long remained elusive. Recently, Argonautes of the bacteria Rhodobacter sphaeroides and Thermus thermophilus were demonstrated to be involved in host defense. The Argonaute of the archaeon Pyrococcus furiosus (PfAgo) belongs to a different branch in the phylogenetic tree, which is most closely related to that of RNA interference-mediating eukaryotic Argonautes. Here we describe a functional and mechanistic characterization of PfAgo. Like the bacterial counterparts, archaeal PfAgo contributes to host defense by interfering with the uptake of plasmid DNA. PfAgo utilizes small 5'-phosphorylated DNA guides to cleave both single stranded and double stranded DNA targets, and does not utilize RNA as guide or target. Thus, with respect to function and specificity, the archaeal PfAgo resembles bacterial Argonautes much more than eukaryotic Argonautes. These findings demonstrate that the role of Argonautes is conserved through the bacterial and archaeal domains of life and suggests that eukaryotic Argonautes are derived from DNA-guided DNA-interfering host defense systems.

Indexed as

Archaeal ProteinsArgonaute ProteinsCatalytic DomainDNADNA CleavageEndodeoxyribonucleasesPlasmidsPyrococcus furiosusTransformation, GeneticArchaeal ProteinsArgonaute ProteinsDNAEndodeoxyribonucleases

Identifiers

PMID25925567
PMCPMC4446448
OpenAlexW2038482997

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.