Evidence map›Paper›PMID 25925565›Full record

ArticleNucleic acids research2015

TET1 is controlled by pluripotency-associated factors in ESCs and downmodulated by PRC2 in differentiated cells and tissues.

Francesco Neri, Danny Incarnato, Anna Krepelova, Daniela Dettori, Stefania Rapelli, Mara Maldotti, Caterina Parlato, Francesca Anselmi, Federico Galvagni, Salvatore Oliviero

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Review
  3. Npac Regulates Pre-mRNA Splicing in Mouse Embryonic Stem Cells.International journal of molecular sciences · 2024
    Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Role of TET dioxygenases in the regulation of both normal and pathological hematopoiesis.Journal of experimental & clinical cancer research : CR · 2022
    Review
  9. Article
  10. Mechanisms that regulate the activities of TET proteins.Cellular and molecular life sciences : CMLS · 2022
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Modelling non-alcoholic fatty liver disease in human hepatocyte-like cells.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Article
  20. Tet Enzymes, Variants, and Differential Effects on Function.Frontiers in cell and developmental biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Francesco NeriHuman Genetics Foundation (HuGeF), via Nizza 52, Torino, 10126, Italy.
Danny IncarnatoHuman Genetics Foundation (HuGeF), via Nizza 52, Torino, 10126, Italy Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università di Torino, Via Accademia Albertina 13, 10123, Torino, Italy.
Anna KrepelovaHuman Genetics Foundation (HuGeF), via Nizza 52, Torino, 10126, Italy.
Daniela DettoriHuman Genetics Foundation (HuGeF), via Nizza 52, Torino, 10126, Italy.
Stefania RapelliHuman Genetics Foundation (HuGeF), via Nizza 52, Torino, 10126, Italy Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università di Torino, Via Accademia Albertina 13, 10123, Torino, Italy.
Mara MaldottiHuman Genetics Foundation (HuGeF), via Nizza 52, Torino, 10126, Italy.
Caterina ParlatoHuman Genetics Foundation (HuGeF), via Nizza 52, Torino, 10126, Italy.
Francesca AnselmiHuman Genetics Foundation (HuGeF), via Nizza 52, Torino, 10126, Italy.
Federico GalvagniDipartimento di Scienze della Vita e Biologia dei Sistemi, Università di Torino, Via Accademia Albertina 13, 10123, Torino, Italy.
Salvatore OlivieroHuman Genetics Foundation (HuGeF), via Nizza 52, Torino, 10126, Italy Dipartimento di Biotecnologie Chimica e Farmacia, Università di Siena, Via Aldo Moro 2, 53100, Siena, Italy salvatore.oliviero@hugef-torino.org.
Italian institute for Genomic Medicine · ITAccademia Albertina delle Belle Arti · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ten-eleven translocation (Tet) genes encode for a family of hydroxymethylase enzymes involved in regulating DNA methylation dynamics. Tet1 is highly expressed in mouse embryonic stem cells (ESCs) where it plays a critical role the pluripotency maintenance. Tet1 is also involved in cell reprogramming events and in cancer progression. Although the functional role of Tet1 has been largely studied, its regulation is poorly understood. Here we show that Tet1 gene is regulated, both in mouse and human ESCs, by the stemness specific factors Oct3/4, Nanog and by Myc. Thus Tet1 is integrated in the pluripotency transcriptional network of ESCs. We found that Tet1 is switched off by cell proliferation in adult cells and tissues with a consequent genome-wide reduction of 5hmC, which is more evident in hypermethylated regions and promoters. Tet1 downmodulation is mediated by the Polycomb repressive complex 2 (PRC2) through H3K27me3 histone mark deposition. This study expands the knowledge about Tet1 involvement in stemness circuits in ESCs and provides evidence for a transcriptional relationship between Tet1 and PRC2 in adult proliferating cells improving our understanding of the crosstalk between the epigenetic events mediated by these factors.

Indexed as

Epigenesis, GeneticAnimalsCell DifferentiationCell ProliferationCells, CulturedDNA-Binding ProteinsDown-RegulationEmbryonic Stem CellsHumansMaleMiceMice, Inbred BALB CMice, Inbred C57BLMixed Function OxygenasesPluripotent Stem CellsPolycomb Repressive Complex 2DNA-Binding ProteinsMixed Function OxygenasesPolycomb Repressive Complex 2Proto-Oncogene ProteinsTET1 protein, humanTET1 protein, mouseTranscription Factors

Identifiers

PMID25925565
PMCPMC4538807
OpenAlexW1986342614

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.