Evidence map›Paper›PMID 25924886›Full record

ArticleBiopolymers2015

Separating chemical and excluded volume interactions of polyethylene glycols with native proteins: Comparison with PEG effects on DNA helix formation.

Irina A Shkel, D B Knowles, M Thomas Record

Abstract read
In one paragraph

Article in Biopolymers, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Hydration-mediated G-protein-coupled receptor activation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Protein shape modulates crowding effects.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Review
  15. Review
  16. Large cosolutes, small cosolutes, and dihydrofolate reductase activity.Protein science : a publication of the Protein Society · 2017
    Article
  17. Article
  18. Article
  19. Cosolutes, Crowding, and Protein Folding Kinetics.The journal of physical chemistry. B · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Irina A ShkelDepartment of Biochemistry, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI, 53706.
D B KnowlesDepartment of Biochemistry, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI, 53706.
M Thomas RecordDepartment of Biochemistry, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI, 53706.

Funding

THERMODYNAMIC AND NMR STUDIES ON THE E COLI CYTOPLASMR01GM047022 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI RECORD, M. THOMAS · 1992 to 2015
$4.1M
NIGMS NIH HHS GM 47022NIGMS NIH HHS R01 GM047022
6 · The paper itself

Abstract

Small and large PEGs greatly increase chemical potentials of globular proteins (μ2), thereby favoring precipitation, crystallization, and protein-protein interactions that reduce water-accessible protein surface and/or protein-PEG excluded volume. To determine individual contributions of PEG-protein chemical and excluded volume interactions to μ2 as functions of PEG molality m3 , we analyze published chemical potential increments μ23  = dμ2/dm3 quantifying unfavorable interactions of PEG (PEG200-PEG6000) with BSA and lysozyme. For both proteins, μ23 increases approximately linearly with the number of PEG residues (N3). A 1 molal increase in concentration of PEG -CH2 OCH2 - groups, for any chain-length PEG, increases μBSA by ∼2.7 kcal/mol and μlysozyme by ∼1.0 kcal/mol. These values are similar to predicted chemical interactions of PEG -CH2 OCH2 - groups with these protein components (BSA ∼3.3 kcal/mol, lysozyme ∼0.7 kcal/mol), dominated by unfavorable interactions with amide and carboxylate oxygens and counterions. While these chemical effects should be dominant for small PEGs, larger PEGS are expected to exhibit unfavorable excluded volume interactions and reduced chemical interactions because of shielding of PEG residues in PEG flexible coils. We deduce that these excluded volume and chemical shielding contributions largely compensate, explaining why the dependence of μ23 on N3 is similar for both small and large PEGs.

Indexed as

AnimalsCattleDNAMuramidasePolyethylene GlycolsProtein BindingProteinsSerum Albumin, BovineThermodynamicsDNAMuramidasePolyethylene GlycolsProteinsSerum Albumin, Bovinem-valuePEGpolymer excluded volumepreferential interactions

Identifiers

PMID25924886
PMCPMC4485569

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.