Evidence map›Paper›PMID 25924622›Full record

ArticleAmerican journal of physiology. Cell physiology2015

Exon 4-encoded sequence is a major determinant of cytotoxicity of apolipoprotein L1.

Atanu K Khatua, Amber M Cheatham, Etty D Kruzel, Pravin C Singhal, Karl Skorecki, Waldemar Popik

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Cell physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  13. Review
  14. Apolipoprotein L1 and mechanisms of kidney disease susceptibility.Current opinion in nephrology and hypertension · 2021
    Review
  15. Article
  16. Article
  17. The Mechanism of Kidney Disease Due to APOL1 Risk Variants.Journal of the American Society of Nephrology : JASN · 2020
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Atanu K KhatuaMeharry Medical College, Center for AIDS Health Disparities Research, Nashville, Tennessee;
Amber M CheathamMeharry Medical College, Center for AIDS Health Disparities Research, Nashville, Tennessee;
Etty D KruzelRappaport Faculty of Medicine and Research Institute, Technion-Israel Institute of Technology, Rambam Medical Center, Haifa, Israel; and.
Pravin C SinghalFeinstein Institute for Medical Research, Manhasset, New York.
Karl SkoreckiRappaport Faculty of Medicine and Research Institute, Technion-Israel Institute of Technology, Rambam Medical Center, Haifa, Israel; and.
Waldemar PopikMeharry Medical College, Center for AIDS Health Disparities Research, Nashville, Tennessee; wpopik@mmc.edu.
Meharry Medical College · USTechnion – Israel Institute of Technology · ILFeinstein Institute for Medical Research · US

Funding

Tennessee CFAR: Implementation of Culturally Responsive Trauma-Informed Care with Youth with HIV in Memphis, TNP30AI110527 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Chandravanu Dash · 2015 to 2026
$27.5M
Technologies and Resources CoreU54MD007593 · NIMHD · MEHARRY MEDICAL COLLEGE · PI ADUNYAH, SAMUEL EVANS · 2012 to 2018
$24.7M
THE MEHARRY RISE INITIATIVER25GM059994 · NIGMS · MEHARRY MEDICAL COLLEGE · PI MOTLEY-JOHNSON, EVANGELINE D · 1999 to 2021
$23.0M
Translational Pathology CoreU54CA163069 · NCI · MEHARRY MEDICAL COLLEGE · PI ADUNYAH, SAMUEL EVANS · 2011 to 2025
$18.8M
Meharry RCMI Program in Women's Health ResearchG12MD007586 · NIMHD · MEHARRY MEDICAL COLLEGE · PI HILDRETH, JAMES E · 2012 to 2016
$7.8M
Research Training in Cardivascular Biology at MeharryT32HL007737 · NHLBI · MEHARRY MEDICAL COLLEGE · PI MARTIN, PAMELA M · 1993 to 2025
$4.7M
Epigenetic factors and HIV-associated NephropathyR01DK098074 · NIDDK · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI SINGHAL, PRAVIN C · 2013 to 2016
$2.5M
Methamphetamine Research Program at Meharry Medical CollegeR24DA036420 · NIDA · MEHARRY MEDICAL COLLEGE · PI CHARLTON, CLIVEL G. · 2014 to 2018
$2.3M
Renin Angioensin Aldosterone System in Drub Abuse and HIV-associated NephropathyR01DK084910 · NIDDK · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI SINGHAL, PRAVIN C · 2010 to 2014
$1.7M
Role of APOL1 in HIVAN pathogenesisR21DK094735 · NIDDK · MEHARRY MEDICAL COLLEGE · PI POPIK, WALDEMAR · 2012 to 2013
$394k
NCI NIH HHS U54 CA-163069NCI NIH HHS U54 CA163069NCRR NIH HHS S10 RR-0254970NHLBI NIH HHS T32 HL007737NIAID NIH HHS P30 AI110527NIDA NIH HHS R24 DA-036420NIDDK NIH HHS R01 DK-084910NIDDK NIH HHS R01 DK084910NIDDK NIH HHS R01 DK-098074NIDDK NIH HHS R01 DK098074NIDDK NIH HHS R21 DK-094735NIDDK NIH HHS R21 DK094735NIGMS NIH HHS R25 GM059994NIMHD NIH HHS G12 MD-007586NIMHD NIH HHS G12 MD007586NIMHD NIH HHS U54 MD-007593NIMHD NIH HHS U54 MD007593
6 · The paper itself

Abstract

The apolipoprotein L1 (APOL1) gene (APOL1) product is toxic to kidney cells, and its G1 and G2 alleles are strongly associated with increased risk for kidney disease progression in African Americans. Variable penetrance of the G1 and G2 risk alleles highlights the significance of additional factors that trigger or modify the progression of disease. In this regard, the effect of alternative splicing in the absence or presence of G1 or G2 alleles is unknown. In this study we investigated whether alternative splicing of non-G1, non-G2 APOL1 (APOL1 G0) affects its biological activity. Among seven APOL1 exons, exons 2 and 4 are differentially expressed in major transcripts. We found that, in contrast to APOL1 splice variants B3 or C, variants A and B1 demonstrate strong toxicity in human embryonic kidney (HEK293T) cells. Subsequently, we established that exon 4 is a major determinant of toxicity of variants A and B1 and that extracellular release of these variants is dispensable for their cytotoxicity. Although only variants A and B1 induced nuclear translocation of transcription factor EB (TFEB), a master regulator of lysosomal biogenesis and autophagy, exon 4-positive and -negative APOL1 variants stimulated perinuclear accumulation of unprocessed autophagosomes. Knockdown of endogenous TFEB did not attenuate APOL1 cytotoxicity, indicating that nuclear translocation of TFEB is dispensable for APOL1 toxicity. Our findings that a human podocyte cell line expresses exon 4-positive and -negative APOL1 transcripts suggest that these variants may play a differential role in podocyte pathology. In summary, we have identified exon 4 as a major determinant of APOL1 G0 cytotoxicity.

Indexed as

AutophagyExonsActive Transport, Cell NucleusAlternative SplicingAmino Acid SequenceApolipoprotein L1ApolipoproteinsBase SequenceBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsGene Expression RegulationHEK293 CellsHumansLipoproteins, HDLMolecular Sequence DataPodocytesRNA InterferenceAPOL1 protein, humanApolipoprotein L1ApolipoproteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsLipoproteins, HDLRNA, MessengerTFEB protein, humanapolipoprotein L1autophagycytotoxicityendocytosisRNA splicing

Identifiers

PMID25924622
PMCPMC4490327
OpenAlexW2007191566

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.