Evidence map›Paper›PMID 25923120›Full record

ArticlePloS one2015

Crystal Structure of Allophycocyanin from Marine Cyanobacterium Phormidium sp. A09DM.

Ravi Raghav Sonani, Gagan Deep Gupta, Datta Madamwar, Vinay Kumar

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ravi Raghav SonaniBRD School of Biosciences, Vadtal Road, Satellite Campus, Sardar Patel University, Vallabh Vidyanagar, India.
Gagan Deep GuptaProtein Crystallography Section, Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai, India.
Datta MadamwarBRD School of Biosciences, Vadtal Road, Satellite Campus, Sardar Patel University, Vallabh Vidyanagar, India.
Vinay KumarProtein Crystallography Section, Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai, India.
Bhabha Atomic Research Centre · INSardar Patel University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isolated phycobilisome (PBS) sub-assemblies have been widely subjected to X-ray crystallography analysis to obtain greater insights into the structure-function relationship of this light harvesting complex. Allophycocyanin (APC) is the phycobiliprotein always found in the PBS core complex. Phycocyanobilin (PCB) chromophores, covalently bound to conserved Cys residues of α- and β- subunits of APC, are responsible for solar energy absorption from phycocyanin and for transfer to photosynthetic apparatus. In the known APC structures, heterodimers of α- and β- subunits (known as αβ monomers) assemble as trimer or hexamer. We here for the first time report the crystal structure of APC isolated from a marine cyanobacterium (Phormidium sp. A09DM). The crystal structure has been refined against all the observed data to the resolution of 2.51 Å to Rwork (Rfree) of 0.158 (0.229) with good stereochemistry of the atomic model. The Phormidium protein exists as a trimer of αβ monomers in solution and in crystal lattice. The overall tertiary structures of α- and β- subunits, and trimeric quaternary fold of the Phormidium protein resemble the other known APC structures. Also, configuration and conformation of the two covalently bound PCB chromophores in the marine APC are same as those observed in fresh water cyanobacteria and marine red algae. More hydrophobic residues, however, constitute the environment of the chromophore bound to α-subunit of the Phormidium protein, owing mainly to amino acid substitutions in the marine protein.

Indexed as

Models, MolecularAmino Acid SequenceCrystallography, X-RayCyanobacteriaDimerizationMolecular Sequence DataPhycobilisomesPhycocyaninProtein Structure, TertiaryProtein SubunitsSequence AlignmentallophycocyaninPhycobilisomesPhycocyaninProtein Subunits

Identifiers

PMID25923120
PMCPMC4414346
OpenAlexW2313853065

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.