Evidence map›Paper›PMID 25922909›Full record

ArticleeLife2015

The preRC protein ORCA organizes heterochromatin by assembling histone H3 lysine 9 methyltransferases on chromatin.

Sumanprava Giri, Vasudha Aggarwal, Julien Pontis, Zhen Shen, Arindam Chakraborty, Abid Khan, Craig Mizzen, Kannanganattu V Prasanth, Slimane Ait-Si-Ali, Taekjip Ha and 1 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. ORChestra coordinates the replication and repair music.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  10. Article
  11. Orc6 is a component of the replication fork and enables efficient mismatch repair.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Sumanprava GiriDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Champaign, United States.
Vasudha AggarwalCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Champaign, United States.
Julien PontisUniversité Paris Diderot, Sorbonne Paris Cité, Laboratoire Epigénétique et Destin Cellulaire, UMR7216, Centre National de la Recherche Scientifique, Paris, France.
Zhen ShenDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Champaign, United States.
Arindam ChakrabortyDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Champaign, United States.
Abid KhanDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Champaign, United States.
Craig MizzenDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Champaign, United States.
Kannanganattu V PrasanthDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Champaign, United States.
Slimane Ait-Si-AliUniversité Paris Diderot, Sorbonne Paris Cité, Laboratoire Epigénétique et Destin Cellulaire, UMR7216, Centre National de la Recherche Scientifique, Paris, France.
Taekjip HaCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Champaign, United States.
Supriya G PrasanthDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Champaign, United States.
University of Illinois Urbana-Champaign · USHoward Hughes Medical Institute · USSorbonne Paris Cité · FRUniversité Paris Cité · FR

Funding

Characterization of nuclear retained RNA-mediated gene regulatory mechanismR01GM088252 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KANNANGANATTU, PRASANTH KUMAR VIJAYAN · 2011 to 2015
$1.4M
Role of ORCA in DNA replicationR01GM099669 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI PRASANTH, SUPRIYA G · 2012 to 2016
$1.3M
Role of ORCA in heterochromatin organization and replicationF31CA180616 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GIRI, SUMANPRAVA · 2014 to 2015
$75k
Howard Hughes Medical InstituteNCI NIH HHS F31 CA180616NIGMS NIH HHS 1R01GM088252NIGMS NIH HHS 1R01GM099669NIGMS NIH HHS R01 GM088252NIGMS NIH HHS R01 GM099669
6 · The paper itself

Abstract

Heterochromatic domains are enriched with repressive histone marks, including histone H3 lysine 9 methylation, written by lysine methyltransferases (KMTs). The pre-replication complex protein, origin recognition complex-associated (ORCA/LRWD1), preferentially localizes to heterochromatic regions in post-replicated cells. Its role in heterochromatin organization remained elusive. ORCA recognizes methylated H3K9 marks and interacts with repressive KMTs, including G9a/GLP and Suv39H1 in a chromatin context-dependent manner. Single-molecule pull-down assays demonstrate that ORCA-ORC (Origin Recognition Complex) and multiple H3K9 KMTs exist in a single complex and that ORCA stabilizes H3K9 KMT complex. Cells lacking ORCA show alterations in chromatin architecture, with significantly reduced H3K9 di- and tri-methylation at specific chromatin sites. Changes in heterochromatin structure due to loss of ORCA affect replication timing, preferentially at the late-replicating regions. We demonstrate that ORCA acts as a scaffold for the establishment of H3K9 KMT complex and its association and activity at specific chromatin sites is crucial for the organization of heterochromatin structure.

Indexed as

Adaptor Proteins, Signal TransducingCell LineHeterochromatinHistone-Lysine N-MethyltransferaseHistonesHumansMethylationProtein Processing, Post-TranslationalSequestosome-1 ProteinAdaptor Proteins, Signal TransducingHeterochromatinHistone-Lysine N-MethyltransferaseHistonesSequestosome-1 ProteinSQSTM1 protein, humancell biologychromosomesgenesheterochromatinhumanlysine methyl transferaseORCA/LRWD1replicationsingle-molecule pull down

Identifiers

PMID25922909
PMCPMC4442312
OpenAlexW2049103142

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.