Evidence map›Paper›PMID 25922532›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Plastid-produced interorgannellar stress signal MEcPP potentiates induction of the unfolded protein response in endoplasmic reticulum.

Justin Walley, Yanmei Xiao, Jin-Zheng Wang, Edward E Baidoo, Jay D Keasling, Zhouxin Shen, Steven P Briggs, Katayoon Dehesh

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 99 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Metabolite control of enzyme activity links stress to biosynthetic regulation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Photosynthetic acclimation to changing environments.Biochemical Society transactions · 2023
    Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Methyl Jasmonate Activates theMolecules (Basel, Switzerland) · 2022
    Article
  17. Chloroplast ROS and stress signaling.Plant communications · 2022
    Review
  18. Function of Chloroplasts in Plant Stress Responses.International journal of molecular sciences · 2021
    Review
  19. Review
  20. Hot topic: Thermosensing in plants.Plant, cell & environment · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Justin WalleySection of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA 92093;
Yanmei XiaoDepartment of Plant Biology, University of California, Davis, CA 95616;
Jin-Zheng WangDepartment of Plant Biology, University of California, Davis, CA 95616;
Edward E BaidooLawrence Berkeley National Laboratory, Joint BioEnergy Institute, Emeryville, CA 94608; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94608; and.
Jay D KeaslingLawrence Berkeley National Laboratory, Joint BioEnergy Institute, Emeryville, CA 94608; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94608; and Department of Chemical and Biomolecular Engineering, Department of Bioengineering, University of California, Berkeley, CA 94720.
Zhouxin ShenSection of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA 92093;
Steven P BriggsSection of Cell and Developmental Biology, University of California at San Diego, La Jolla, CA 92093;
Katayoon DeheshDepartment of Plant Biology, University of California, Davis, CA 95616; kdehesh@ucdavis.edu.
University of California, Davis · USUniversity of California, San Diego · USJoint BioEnergy Institute · USLawrence Berkeley National Laboratory · US

Funding

Defining the Retrograde Plastid-to-Nucleus Stress Signaling PathwayR01GM107311 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI DEHESH, KATAYOON · 2013 to 2021
$2.5M
Mechanisms by which a fungal HDAC inhibitor suppresses innate immunity in maizeF32GM096707 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WALLEY, JUSTIN WILLIAM · 2011 to 2012
$101k
NIGMS NIH HHS F32 GM096707NIGMS NIH HHS F32GM096707NIGMS NIH HHS NIH R01GM107311NIGMS NIH HHS R01 GM107311
6 · The paper itself

Abstract

Cellular homeostasis in response to internal and external stimuli requires a tightly coordinated interorgannellar communication network. We recently identified methylerythritol cyclodiphosphate (MEcPP) as a novel stress-specific retrograde signaling metabolite that accumulates in response to environmental perturbations to relay information from plastids to the nucleus. We now demonstrate, using a combination of transcriptome and proteome profiling approaches, that mutant plants (ceh1) with high endogenous levels of MEcPP display increased transcript and protein levels for a subset of the core unfolded protein response (UPR) genes. The UPR is an adaptive cellular response conserved throughout eukaryotes to stress conditions that perturb the endoplasmic reticulum (ER) homeostasis. Our results suggest that MEcPP directly triggers the UPR. Exogenous treatment with MEcPP induces the rapid and transient induction of both the unspliced and spliced forms of the UPR gene bZIP60. Moreover, compared with the parent background (P), ceh1 mutants are less sensitive to the ER-stress-inducing agent tunicamycin (Tm). P and ceh1 plants treated with Tm display similar UPR transcript profiles, suggesting that although MEcPP accumulation causes partial induction of selected UPR genes, full induction is triggered by accumulation of misfolded proteins. This finding refines our perspective of interorgannellar communication by providing a link between a plastidial retrograde signaling molecule and its targeted ensemble of UPR components in ER.

Indexed as

Gene Expression Regulation, PlantArabidopsisChloroplastsEndoplasmic ReticulumEndoplasmic Reticulum StressErythritolGene Expression ProfilingHomeostasisMicroarray AnalysisPlant ProteinsPlastidsProtein FoldingProteomeProteomicsSignal TransductionTranscriptomeErythritolmethyl-D-erythritol 2,4-cyclodiphosphatePlant ProteinsProteomeendoplasmic reticuluminterorgannellar communicationmethylerythritol cyclodiphosphateretrograde signalingunfolded protein response

Identifiers

PMID25922532
PMCPMC4434691
OpenAlexW2153175788

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.