Evidence map›Paper›PMID 25921705›Full record

ArticleImmunogenetics2015

Analysis of the reptile CD1 genes: evolutionary implications.

Zhi Yang, Chunyan Wang, Tao Wang, Jianhui Bai, Yu Zhao, Xuhan Liu, Qingwei Ma, Xiaobing Wu, Ying Guo, Yaofeng Zhao and 1 more

Abstract read
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In one paragraph

Article in Immunogenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
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  6. Article
  7. A cold-blooded view of adaptive immunity.Nature reviews. Immunology · 2018
    Review
  8. Article
  9. Article
  10. Review
  11. Mammalian CD1 and MR1 genes.Immunogenetics · 2016
    Review
  12. Review
  13. Review
  14. Review
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  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Zhi YangState Key Laboratory of Agrobiotechnology, China Agricultural University, Beijing, 100193, People's Republic of China.
Chunyan Wang
Tao Wang
Jianhui Bai
Yu Zhao
Xuhan Liu
Qingwei Ma
Xiaobing Wu
Ying Guo
Yaofeng Zhao
Liming Ren
China Agricultural University · CNChinese Academy of Sciences · CNAnhui Normal University · CNPeking University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CD1, as the third family of antigen-presenting molecules, is previously only found in mammals and chickens, which suggests that the chicken and mammalian CD1 shared a common ancestral gene emerging at least 310 million years ago. Here, we describe CD1 genes in the green anole lizard and Crocodylia, demonstrating that CD1 is ubiquitous in mammals, birds, and reptiles. Although the reptilian CD1 protein structures are predicted to be similar to human CD1d and chicken CD1.1, CD1 isotypes are not found to be orthologous between mammals, birds, and reptiles according to phylogenetic analyses, suggesting an independent diversification of CD1 isotypes during the speciation of mammals, birds, and reptiles. In the green anole lizard, although the single CD1 locus and MHC I gene are located on the same chromosome, there is an approximately 10-Mb-long sequence in between, and interestingly, several genes flanking the CD1 locus belong to the MHC paralogous region on human chromosome 19. The CD1 genes in Crocodylia are located in two loci, respectively linked to the MHC region and MHC paralogous region (corresponding to the MHC paralogous region on chromosome 19). These results provide new insights for studying the origin and evolution of CD1.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsAntigens, CD1ChickensChromosome MappingHumansMammalsMultigene FamilyPhylogenyReptilesSequence HomologyAntigens, CD1

Identifiers

PMID25921705
OpenAlexW2153833194

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.