Evidence map›Paper›PMID 25921072›Full record

ArticleMolecular cell2015

The dynamics of eukaryotic replication initiation: origin specificity, licensing, and firing at the single-molecule level.

Daniel Duzdevich, Megan D Warner, Simina Ticau, Nikola A Ivica, Stephen P Bell, Eric C Greene

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 86 citations in OpenAlex.

  1. Review
  2. OptimizingmSphere · 2025
    Article
  3. Review
  4. Article
  5. Review
  6. Changing protein-DNA interactions promote ORC binding-site exchange during replication origin licensing.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Article
  9. Review
  10. Single Molecule Imaging of DNA-Protein Interactions Using DNA Curtains.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  11. Origin recognition complex harbors an intrinsic nucleosome remodeling activity.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. NAR genomics and bioinformatics · 2021
    Article
  18. Review
  19. DNA replication machinery: Insights fromComputational and structural biotechnology journal · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Daniel DuzdevichDepartment of Biological Sciences, Columbia University, New York, NY 10032, USA.
Megan D WarnerDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Simina TicauDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Nikola A IvicaDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Stephen P BellDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Eric C GreeneDepartment of Biochemistry and Molecular Biophysics, and the Howard Hughes Medical Institute, Columbia University, New York, NY 10032, USA. Electronic address: ecg2108@columbia.edu.
Massachusetts Institute of Technology · USHoward Hughes Medical Institute · USColumbia University · US

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MATTHEW G. VANDER HEIDEN · 1985 to 2026
$93.9M
PRE-DOCTORAL TRAINING IN THE BIOLOGICAL SCIENCEST32GM007287 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P., KEATING, AMY E · 1985 to 2019
$40.8M
INITIATION OF DNA REPLICATION OF YEAST CHROMOSOMESR01GM052339 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P. · 1995 to 2019
$5.5M
Visualizing the Dynamics of Chromatin and Chromatin Remodeling ProteinsR01GM082848 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GREENE, ERIC C · 2008 to 2016
$2.4M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA014051NIGMS NIH HHS GM007287NIGMS NIH HHS GM082848NIGMS NIH HHS GM52339NIGMS NIH HHS R01 GM052339NIGMS NIH HHS R01 GM082848NIGMS NIH HHS T32 GM007287
6 · The paper itself

Abstract

Eukaryotic replication initiation is highly regulated and dynamic. It begins with the origin recognition complex (ORC) binding DNA sites called origins of replication. ORC, together with Cdc6 and Cdt1, mediate pre-replicative complex (pre-RC) assembly by loading a double hexamer of Mcm2-7: the core of the replicative helicase. Here, we use single-molecule imaging to directly visualize Saccharomyces cerevisiae pre-RC assembly and replisome firing in real time. We show that ORC can locate and stably bind origins within large tracts of non-origin DNA and that Cdc6 drives ordered pre-RC assembly. We further show that the dynamics of the ORC-Cdc6 interaction dictate Mcm2-7 loading specificity and that Mcm2-7 double hexamers form preferentially at a native origin sequence. Finally, we demonstrate that single Mcm2-7 hexamers propagate bidirectionally, monotonically, and processively as constituents of active replisomes.

Indexed as

AlgorithmsBinding SitesCell Cycle ProteinsDNA-Binding ProteinsDNA, FungalDNA ReplicationEukaryotic CellsKineticsMinichromosome Maintenance ProteinsModels, GeneticOrigin Recognition ComplexProtein BindingReplication OriginSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsABFI protein, S cerevisiaeCDC6 protein, S cerevisiaeCell Cycle ProteinsDNA-Binding ProteinsDNA, FungalMinichromosome Maintenance ProteinsOrigin Recognition ComplexSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID25921072
PMCPMC4427541
OpenAlexW2031997435

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.