Evidence map›Paper›PMID 25921062›Full record

ArticleThe EMBO journal2015

Okazaki fragment maturation involves α-segment error editing by the mammalian FEN1/MutSα functional complex.

Songbai Liu, Guojun Lu, Shafat Ali, Wenpeng Liu, Li Zheng, Huifang Dai, Hongzhi Li, Hong Xu, Yuejin Hua, Yajing Zhou and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

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  18. Role of FEN1 S187 phosphorylation in counteracting oxygen-induced stress and regulating postnatal heart development.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2017
    Article
  19. Article
  20. Eukaryotic genome instability in light of asymmetric DNA replication.Critical reviews in biochemistry and molecular biology · 2016
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Songbai LiuColleges of Life Sciences and Agriculture and Biotechnology, Zhejiang University, Hangzhou Zhejiang, China Departments of Radiation Biology and Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA, USA.
Guojun LuDepartments of Radiation Biology and Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA, USA.
Shafat AliDepartments of Radiation Biology and Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA, USA.
Wenpeng LiuColleges of Life Sciences and Agriculture and Biotechnology, Zhejiang University, Hangzhou Zhejiang, China Departments of Radiation Biology and Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA, USA.
Li ZhengDepartments of Radiation Biology and Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA, USA.
Huifang DaiDepartments of Radiation Biology and Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA, USA.
Hongzhi LiDepartments of Radiation Biology and Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA, USA.
Hong XuColleges of Life Sciences and Agriculture and Biotechnology, Zhejiang University, Hangzhou Zhejiang, China.
Yuejin HuaColleges of Life Sciences and Agriculture and Biotechnology, Zhejiang University, Hangzhou Zhejiang, China.
Yajing ZhouInstitute of Life Sciences, Jiangsu University, Zhen Jiang Jiangsu, China.
Janice OrtegaGraduate Center for Toxicology, Markey Cancer Center, University of Kentucky College of Medicine, Lexington, KY, USA.
Guo-Min LiGraduate Center for Toxicology, Markey Cancer Center, University of Kentucky College of Medicine, Lexington, KY, USA.
Thomas A KunkelGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, NIH, DHHS, Research Triangle Park, NC, USA.
Binghui ShenDepartments of Radiation Biology and Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA, USA bshen@coh.org.
City Of Hope National Medical Center · USZhejiang University · CNJiangsu University · CNNational Institute of Environmental Health Sciences · USThe Graduate Center, CUNY · USUniversity of Kentucky · US

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
Studies Of DNA Mismatch RepairZIAES065089 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI KUNKEL, THOMAS A · 2009 to 2025
$17.8M
Function Analysis of FEN-1 Nuclease in Genome StabilityR01CA073764 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI BINGHUI SHEN · 2002 to 2026
$7.9M
Interdisciplinary Research Training in Cancer BiologyT32CA165990 · NCI · UNIVERSITY OF KENTUCKY · PI Bernard Mark Evers, KATHLEEN L. O'CONNOR · 2013 to 2026
$3.2M
STUDIES OF DNA MISMATCH REPAIRZ01ES065089 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI KUNKEL, THOMAS A · 1997 to 2008
$1.3M
Intramural NIH HHS Z01 ES065089NCI NIH HHS P30 CA033572NCI NIH HHS R01 CA073764NCI NIH HHS R01 CA076734NCI NIH HHS T32 CA165990
6 · The paper itself

Abstract

During nuclear DNA replication, proofreading-deficient DNA polymerase α (Pol α) initiates Okazaki fragment synthesis with lower fidelity than bulk replication by proofreading-proficient Pol δ or Pol ε. Here, we provide evidence that the exonuclease activity of mammalian flap endonuclease (FEN1) excises Pol α replication errors in a MutSα-dependent, MutLα-independent mismatch repair process we call Pol α-segment error editing (AEE). We show that MSH2 interacts with FEN1 and facilitates its nuclease activity to remove mismatches near the 5' ends of DNA substrates. Mouse cells and mice encoding FEN1 mutations display AEE deficiency, a strong mutator phenotype, enhanced cellular transformation, and increased cancer susceptibility. The results identify a novel role for FEN1 in a specialized mismatch repair pathway and a new cancer etiological mechanism.

Indexed as

DNA Mismatch RepairAnimalsCells, CulturedDNADNA Polymerase IDNA ReplicationEmbryo, MammalianFemaleFlap EndonucleasesHEK293 CellsHeLa CellsHumansMaleMiceMice, TransgenicMutS DNA Mismatch-Binding ProteinDNADNA Polymerase IFlap EndonucleasesMutS DNA Mismatch-Binding ProteinOkazaki fragmentsDNA mismatch repairflap endonuclease 1MutSαOkazaki fragment maturationα‐segment error editing

Identifiers

PMID25921062
PMCPMC4516434
OpenAlexW2082175154

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.