Evidence map›Paper›PMID 25920558›Full record

ArticleEuropean journal of human genetics : EJHG2016

Epidemiological, clinical and biochemical characterization of the p.(Ala359Asp) SMPD1 variant causing Niemann-Pick disease type B.

Mariana Acuña, Pablo Martínez, Carol Moraga, Xingxuan He, Mauricio Moraga, Bessie Hunter, Peter Nuernberg, Rodrigo A Gutiérrez, Mauricio González, Edward H Schuchman and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Review
  4. Acid sphingomyelinase deficiency with homozygous p.Arg610del genotype in an elderly patient: a rare case report.Jornal brasileiro de pneumologia : publicacao oficial da Sociedade Brasileira de Pneumologia e Tisilogia · 2024
    Article
  5. Assessment of health state utilities associated with adult and pediatric acid sphingomyelinase deficiency (ASMD).The European journal of health economics : HEPAC : health economics in prevention and care · 2024
    Article
  6. Article
  7. Review
  8. Interstitial lung disease in lysosomal storage disorders.European respiratory review : an official journal of the European Respiratory Society · 2021
    Article
  9. Article
  10. Review
  11. Review
  12. Types A and B Niemann-Pick disease.Molecular genetics and metabolism
    Review
  13. Mutational spectrum ofPakistan journal of medical sciences
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Mariana AcuñaDepartamento de Gastroenterología, Facultad de Medicina, Pontificia Universidad Católica de Chile, Santiago, Chile.
Pablo MartínezDepartamento de Gastroenterología, Facultad de Medicina, Pontificia Universidad Católica de Chile, Santiago, Chile.
Carol MoragaFONDAP Center for Genome Regulation (CGR), Santiago, Chile.
Xingxuan HeDepartment of Genetics & Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Mauricio MoragaPrograma de Genética Humana, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Santiago, Chile.
Bessie HunterHospital Luis Calvo Mackenna, Santiago, Chile.
Peter NuernbergCologne Center for Genomics (CCG), University of Cologne, Köln, Germany.
Rodrigo A GutiérrezFONDAP Center for Genome Regulation (CGR), Santiago, Chile.
Mauricio GonzálezFONDAP Center for Genome Regulation (CGR), Santiago, Chile.
Edward H SchuchmanDepartment of Genetics & Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
José Luis SantosDepartamento de Nutrición, Pontificia Universidad Católica de Chile, Santiago, Chile.
Juan Francisco MiquelDepartamento de Gastroenterología, Facultad de Medicina, Pontificia Universidad Católica de Chile, Santiago, Chile.
Paulina MabeHospital Dr. Exequiel González Cortés, Unidad de Neurología, Santiago, Chile.
Silvana ZanlungoDepartamento de Gastroenterología, Facultad de Medicina, Pontificia Universidad Católica de Chile, Santiago, Chile.
Pontificia Universidad Católica de Chile · CLIcahn School of Medicine at Mount Sinai · USUniversity of Chile · CLHospital Luis Calvo Mackenna · CLUniversity of Cologne · DE

Funding

ACID SPHINGOMYELINASE & NIEMANN-PICK DISEASER01HD028607 · NICHD · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI SCHUCHMAN, EDWARD H. · 1992 to 2011
$4.4M
Acid Sphingomyelinase and Niemann-Pick DiseaseR37HD028607 · NICHD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SCHUCHMAN, EDWARD H. · 2012 to 2021
$4.2M
NICHD NIH HHS HD28607NICHD NIH HHS R01 HD028607NICHD NIH HHS R37 HD028607
6 · The paper itself

Abstract

Niemann-Pick disease type B (NPDB) is a rare, inherited lysosomal storage disorder that occurs due to variants in the sphingomyelin phosphodiesterase 1 (SMPD1) gene and the resultant deficiency of acid sphingomyelinase (ASM) activity. While numerous variants causing NPDB have been described, only a small number have been studied in any detail. Herein, we describe the frequency of the p.(Ala359Asp) variant in the healthy Chilean population, and determine the haplotype background of homozygous patients to establish if this variant originated from a common founder. Genomic DNA samples from 1691 healthy individuals were analyzed for the p.(Ala359Asp) variant. The frequency of p.(Ala359Asp) was found to be 1/105.7, predicting a disease incidence of 1/44 960 in Chile, higher than the incidence estimated by the number of confirmed NPDB cases. We also describe the clinical characteristics of 13 patients homozygous for p.(Ala359Asp) and all of them had moderate to severe NPDB disease. In addition, a conserved haplotype and shared 280 Kb region around the SMPD1 gene was observed in the patients analyzed, indicating that the variant originated from a common ancestor. The haplotype frequency and mitochondrial DNA analysis suggest an Amerindian origin for the variant. To assess the effect of the p.(Ala359Asp) variant, we transfected cells with the ASM-p.(Ala359Asp) cDNA and the activity was only 4.2% compared with the wild-type cDNA, definitively demonstrating the causative effect of the variant on ASM function. Information on common variants such as p.(Ala359Asp) is essential to guide the successful implementation for future therapies and benefit to patients.

Indexed as

ChileDNA, MitochondrialFemaleFounder EffectGenotypeHaplotypesHumansMiddle AgedMutationNiemann-Pick Disease, Type BPedigreePolymorphism, Single NucleotideSphingomyelin PhosphodiesteraseDNA, MitochondrialSMPD1 protein, humanSphingomyelin Phosphodiesterase

Identifiers

PMID25920558
PMCPMC4717211
OpenAlexW2054159532

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.