Evidence map›Paper›PMID 25920553›Full record

SynthesisEuropean journal of human genetics : EJHG2016

Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.

Ciara Coleman, Emma M Quinn, Anthony W Ryan, Judith Conroy, Valerie Trimble, Nasir Mahmud, Nicholas Kennedy, Aiden P Corvin, Derek W Morris, Gary Donohoe and 10 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in European journal of human genetics : EJHG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Replacing the Burden of the Gluten Free Diet: Then, Now, and the Future.International journal of molecular sciences · 2022
    Review
  10. Genetics of irritable bowel syndrome: shifting gear via biobank-scale studies.Nature reviews. Gastroenterology & hepatology · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Ciara ColemanDepartment of Medicine, Institute of Molecular Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland.
Emma M QuinnDepartment of Medicine, Institute of Molecular Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland.
Anthony W RyanDepartment of Medicine, Institute of Molecular Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland.
Judith ConroyConway Institute, University College Dublin, Dublin, Ireland.
Valerie TrimbleDepartment of Medicine, Institute of Molecular Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland.
Nasir MahmudDepartment of Medicine, Institute of Molecular Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland.
Nicholas KennedyDepartment of Medicine, Institute of Molecular Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland.
Aiden P CorvinDepartment of Psychiatry, Trinity College Dublin, Dublin, Ireland.
Derek W MorrisCogGene Group, Discipline of Biochemistry and School of Psychology, National University of Ireland Galway, Galway, Ireland.
Gary DonohoeCogGene Group, Discipline of Biochemistry and School of Psychology, National University of Ireland Galway, Galway, Ireland.
Colm O'MorainDepartment of Medicine, Trinity College Dublin, Adelaide and Meath Hospital, Tallagh, Dublin, Ireland.
Padraic MacMathunaDepartment of Gastroenterology, Mater Misercordiae Hospital, Dublin, Ireland.
Valerie ByrnesDepartment of Gastroenterology, University College Hospital, Galway, Ireland.
Clifford KiatDepartment of Gastroenterology, University College Hospital, Galway, Ireland.
Gosia TrynkaWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK.ORCID http://orcid.org/0000-0002-6955-9529
Cisca WijmengaGenetics Department, University Medical Center and University of Groningen, Groningen, The Netherlands.
Dermot KelleherDepartment of Medicine, Institute of Molecular Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland.
Sean EnnisConway Institute, University College Dublin, Dublin, Ireland.
Richard J L AnneyDepartment of Psychiatry, Trinity College Dublin, Dublin, Ireland.
Ross McManusDepartment of Medicine, Institute of Molecular Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland.

Funding

Wellcome TrustWellcome Trust WT098051
6 · The paper itself

Abstract

Coeliac disease (CD) is a chronic immune-mediated disease triggered by the ingestion of gluten. It has an estimated prevalence of approximately 1% in European populations. Specific HLA-DQA1 and HLA-DQB1 alleles are established coeliac susceptibility genes and are required for the presentation of gliadin to the immune system resulting in damage to the intestinal mucosa. In the largest association analysis of CD to date, 39 non-HLA risk loci were identified, 13 of which were new, in a sample of 12,014 individuals with CD and 12 228 controls using the Immunochip genotyping platform. Including the HLA, this brings the total number of known CD loci to 40. We have replicated this study in an independent Irish CD case-control population of 425 CD and 453 controls using the Immunochip platform. Using a binomial sign test, we show that the direction of the effects of previously described risk alleles were highly correlated with those reported in the Irish population, (P=2.2 × 10(-16)). Using the Polygene Risk Score (PRS) approach, we estimated that up to 35% of the genetic variance could be explained by loci present on the Immunochip (P=9 × 10(-75)). When this is limited to non-HLA loci, we explain a maximum of 4.5% of the genetic variance (P=3.6 × 10(-18)). Finally, we performed a meta-analysis of our data with the previous reports, identifying two further loci harbouring the ZNF335 and NIFA genes which now exceed genome-wide significance, taking the total number of CD susceptibility loci to 42.

Indexed as

Genome-Wide Association StudyImmune SystemAllelesDNA-Binding ProteinsGenetic Predisposition to DiseaseGenotypeGliadinHLA-DQ AntigensHumansIntestinal MucosaIntracellular Signaling Peptides and ProteinsNuclear ProteinsTranscription FactorsDNA-Binding ProteinsGliadinHLA-DQ AntigensIntracellular Signaling Peptides and ProteinsNuclear ProteinsTranscription FactorsZNF335 protein, human

Identifiers

PMID25920553
PMCPMC4717209

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.