Evidence map›Paper›PMID 25919366›Full record

ArticlePloS one2014

Proteomic Analysis of Plasma from California Sea Lions (Zalophus californianus) Reveals Apolipoprotein E as a Candidate Biomarker of Chronic Domoic Acid Toxicosis.

Benjamin A Neely, Jason A Ferrante, J Mauro Chaves, Jennifer L Soper, Jonas S Almeida, John M Arthur, Frances M D Gulland, Michael G Janech

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Surveying the Vampire Bat (Journal of proteome research · 2021
    Article
  6. Article
  7. Article
  8. Complementary approaches to diagnosing marine diseases: a union of the modern and the classic.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Benjamin A NeelyDepartment of Medicine, Division of Nephrology, Medical University of South Carolina, Charleston, SC, United States of America.
Jason A FerranteDepartment of Medicine, Division of Nephrology, Medical University of South Carolina, Charleston, SC, United States of America; Grice Marine Laboratory, College of Charleston, Charleston, SC, United States of America.
J Mauro ChavesDepartment of Medicine, Division of Nephrology, Medical University of South Carolina, Charleston, SC, United States of America.
Jennifer L SoperThe Marine Mammal Center, Sausalito, CA, United States of America.
Jonas S AlmeidaDepartment of Biomedical Informatics, Stony Brook University, Long Island, NY, United States of America.
John M ArthurDepartment of Medicine, Division of Nephrology, Medical University of South Carolina, Charleston, SC, United States of America; Research Service, Ralph H. Johnson VA Medical Center, Charleston, SC, United States of America.
Frances M D GullandThe Marine Mammal Center, Sausalito, CA, United States of America.
Michael G JanechDepartment of Medicine, Division of Nephrology, Medical University of South Carolina, Charleston, SC, United States of America; Grice Marine Laboratory, College of Charleston, Charleston, SC, United States of America; Research Service, Ralph H. Johnson VA Medical Center, Charleston, SC, United States of America.
College of Charleston · USMarine Mammal Center · USMedical University of South Carolina · USRalph H. Johnson VA Medical Center · USStony Brook University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Domoic acid toxicosis (DAT) in California sea lions (Zalophus californianus) is caused by exposure to the marine biotoxin domoic acid and has been linked to massive stranding events and mortality. Diagnosis is based on clinical signs in addition to the presence of domoic acid in body fluids. Chronic DAT further is characterized by reoccurring seizures progressing to status epilepticus. Diagnosis of chronic DAT is often slow and problematic, and minimally invasive tests for DAT have been the focus of numerous recent biomarker studies. The goal of this study was to retrospectively profile plasma proteins in a population of sea lions with chronic DAT and those without DAT using two dimensional gel electrophoresis to discover whether individual, multiple, or combinations of protein and clinical data could be utilized to identify sea lions with DAT. Using a training set of 32 sea lion sera, 20 proteins and their isoforms were identified that were significantly different between the two groups (p<0.05). Interestingly, 11 apolipoprotein E (ApoE) charge forms were decreased in DAT samples, indicating that ApoE charge form distributions may be important in the progression of DAT. In order to develop a classifier of chronic DAT, an independent blinded test set of 20 sea lions, seven with chronic DAT, was used to validate models utilizing ApoE charge forms and eosinophil counts. The resulting support vector machine had high sensitivity (85.7% with 92.3% negative predictive value) and high specificity (92.3% with 85.7% positive predictive value). These results suggest that ApoE and eosinophil counts along with machine learning can perform as a robust and accurate tool to diagnose chronic DAT. Although this analysis is specifically focused on blood biomarkers and routine clinical data, the results demonstrate promise for future studies combining additional variables in multidimensional space to create robust classifiers.

Indexed as

AnimalsApolipoproteins EEosinophilsFemaleKainic AcidMachine LearningMaleNeuromuscular Depolarizing AgentsNeurotoxicity SyndromesProteomicsRetrospective StudiesSea LionsSupport Vector MachineApolipoproteins Edomoic acidKainic AcidNeuromuscular Depolarizing Agents

Identifiers

PMID25919366
PMCPMC4412824
OpenAlexW2039360253

What OpenQuestion holds

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LicenceCC0
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.