Evidence map›Paper›PMID 25918242›Full record

ArticleMolecular and cellular biology2015

Spt6 Is Essential for rRNA Synthesis by RNA Polymerase I.

Krysta L Engel, Sarah L French, Olga V Viktorovskaya, Ann L Beyer, David A Schneider

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Krysta L EngelDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Sarah L FrenchDepartment of Microbiology, Immunology and Cancer Biology, University of Virginia Health System, Charlottesville, Virginia, USA.
Olga V ViktorovskayaDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Ann L BeyerDepartment of Microbiology, Immunology and Cancer Biology, University of Virginia Health System, Charlottesville, Virginia, USA.
David A SchneiderDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, Alabama, USA dschneid@uab.edu.
University of Alabama at Birmingham · USUniversity of Virginia Health System · US

Funding

ZINC DIETARY ALTERATIONS OF CADMIUM INDUCED HEPATIC TOXICITY IN RATSS06GM008111 · NIGMS · FLORIDA AGRICULTURAL AND MECHANICAL UNIV · PI REAMS, ROMONIA RENEE · 1989 to 2008
$9.1M
Control of RNA polymerase I transcription initiation and elongationR01GM084946 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SCHNEIDER, DAVID ALAN · 2009 to 2020
$3.8M
Visualizing Genetic Activity in Normal & Mutant YeastR01GM063952 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI BEYER, ANN L. · 2001 to 2013
$3.7M
NIGMS NIH HHS GM008111NIGMS NIH HHS GM063952NIGMS NIH HHS GM084946NIGMS NIH HHS R01 GM063952NIGMS NIH HHS R01 GM084946NIGMS NIH HHS S06 GM008111
6 · The paper itself

Abstract

Spt6 (suppressor of Ty6) has many roles in transcription initiation and elongation by RNA polymerase (Pol) II. These effects are mediated through interactions with histones, transcription factors, and the RNA polymerase. Two lines of evidence suggest that Spt6 also plays a role in rRNA synthesis. First, Spt6 physically associates with a Pol I subunit (Rpa43). Second, Spt6 interacts physically and genetically with Spt4/5, which directly affects Pol I transcription. Utilizing a temperature-sensitive allele, spt6-1004, we show that Spt6 is essential for Pol I occupancy of the ribosomal DNA (rDNA) and rRNA synthesis. Our data demonstrate that protein levels of an essential Pol I initiation factor, Rrn3, are reduced when Spt6 is inactivated, leading to low levels of Pol I-Rrn3 complex. Overexpression of RRN3 rescues Pol I-Rrn3 complex formation; however, rRNA synthesis is not restored. These data suggest that Spt6 is involved in either recruiting the Pol I-Rrn3 complex to the rDNA or stabilizing the preinitiation complex. The findings presented here identify an unexpected, essential role for Spt6 in synthesis of rRNA.

Indexed as

DNA-Binding ProteinsDNA, RibosomalHistone ChaperonesNuclear ProteinsPol1 Transcription Initiation Complex ProteinsRNA, FungalRNA Polymerase IRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional Elongation FactorsDNA-Binding ProteinsDNA, RibosomalHistone ChaperonesNuclear ProteinsPol1 Transcription Initiation Complex ProteinsRNA, FungalRNA Polymerase IRNA, RibosomalRpa43 protein, S cerevisiaeRRN3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSPT6 protein, S cerevisiaeTranscriptional Elongation Factors

Identifiers

PMID25918242
PMCPMC4456441
OpenAlexW2062943250

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.