Evidence map›Paper›PMID 25918165›Full record

ArticleThe Journal of biological chemistry2015

Regulation of Structural Dynamics within a Signal Recognition Particle Promotes Binding of Protein Targeting Substrates.

Feng Gao, Alicia D Kight, Rory Henderson, Srinivas Jayanthi, Parth Patel, Marissa Murchison, Priyanka Sharma, Robyn L Goforth, Thallapuranam Krishnaswamy Suresh Kumar, Ralph L Henry and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
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  6. Review
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  8. Article
  9. Review
  10. Article
  11. Chloroplast SRP43 acts as a chaperone for glutamyl-tRNA reductase, the rate-limiting enzyme in tetrapyrrole biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Article
  13. Conformational dynamics of a membrane protein chaperone enables spatially regulated substrate capture and release.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Feng GaoDepartments of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701.
Alicia D KightBiological Sciences, University of Arkansas, Fayetteville, Arkansas 72701.
Rory HendersonDepartments of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701.
Srinivas JayanthiDepartments of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701.
Parth PatelDepartments of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701.
Marissa MurchisonDepartments of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701.
Priyanka SharmaBiological Sciences, University of Arkansas, Fayetteville, Arkansas 72701.
Robyn L GoforthBiological Sciences, University of Arkansas, Fayetteville, Arkansas 72701.
Thallapuranam Krishnaswamy Suresh KumarDepartments of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701. Electronic address: sthalla@uark.edu.
Ralph L HenryBiological Sciences, University of Arkansas, Fayetteville, Arkansas 72701. Electronic address: rahenry@uark.edu.
Colin D HeyesDepartments of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701. Electronic address: cheyes@uark.edu.
University of Arkansas at Fayetteville · US

Funding

Center for Protein Structure and FunctionP30GM103450 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI MILLETT, FRANCIS S · 2012 to 2014
$3.2M
RESEARCH PILOT PROJECT PROGRAMP30RR031154 · NCRR · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI HINTON, JAMES F · 2010 to 2011
$2.2M
NCRR NIH HHS 1P30RR031154NCRR NIH HHS P30 RR031154NIGMS NIH HHS P30 GM103450
6 · The paper itself

Abstract

Protein targeting is critical in all living organisms and involves a signal recognition particle (SRP), an SRP receptor, and a translocase. In co-translational targeting, interactions among these proteins are mediated by the ribosome. In chloroplasts, the light-harvesting chlorophyll-binding protein (LHCP) in the thylakoid membrane is targeted post-translationally without a ribosome. A multidomain chloroplast-specific subunit of the SRP, cpSRP43, is proposed to take on the role of coordinating the sequence of targeting events. Here, we demonstrate that cpSRP43 exhibits significant interdomain dynamics that are reduced upon binding its SRP binding partner, cpSRP54. We showed that the affinity of cpSRP43 for the binding motif of LHCP (L18) increases when cpSRP43 is complexed to the binding motif of cpSRP54 (cpSRP54pep). These results support the conclusion that substrate binding to the chloroplast SRP is modulated by protein structural dynamics in which a major role of cpSRP54 is to improve substrate binding efficiency to the cpSRP.

Indexed as

Amino Acid MotifsArabidopsisArabidopsis ProteinsIntracellular MembranesProtein BindingProtein TransportSignal Recognition ParticleThylakoidsArabidopsis ProteinscpSRP43 protein, ArabidopsisSignal Recognition Particlechloroplastisothermal titration calorimetry (ITC)membrane transportmolecular dynamicsprotein dynamicprotein targetingsignal recognition particle (SRP)single molecule biophysics

Identifiers

PMID25918165
PMCPMC4505461
OpenAlexW2073015931

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.