Evidence map›Paper›PMID 25917914›Full record

ArticleJournal of bacteriology2015

Role and Function of LitR, an Adenosyl B12-Bound Light-Sensitive Regulator of Bacillus megaterium QM B1551, in Regulation of Carotenoid Production.

Hideaki Takano, Kou Mise, Kenta Hagiwara, Naoya Hirata, Shoko Watanabe, Minami Toriyabe, Hatsumi Shiratori-Takano, Kenji Ueda

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 47 citations in OpenAlex.

  1. Methanotroph Methylotuvimicrobium alcaliphilum 20Z-3E as a fumarate producer: transcriptomic analysis and the role of malic enzyme.International microbiology : the official journal of the Spanish Society for Microbiology · 2025
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  4. Redox driven BNature communications · 2023
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  7. Chromogenicity of aerobic spore-forming bacteria of the Bacillaceae family isolated from different ecological niches and physiographic zones.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Article
  8. Engineering Light-Control in Biology.Frontiers in bioengineering and biotechnology · 2022
    Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Light Response ofJournal of bacteriology · 2020
    Article
  14. Bioinformatics of Metalloproteins and Metalloproteomes.Molecules (Basel, Switzerland) · 2020
    Review
  15. Article
  16. Mutational loss of carotenoids in alkaliphilicMicrobiology (Reading, England) · 2019
    Article
  17. Article
  18. Article
  19. A New Facet of Vitamin BAnnual review of biochemistry · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Hideaki TakanoLife Science Research Center, College of Bioresource Sciences, Nihon University, Kanagawa, Japan takano.hideaki@nihon-u.ac.jp.
Kou MiseLife Science Research Center, College of Bioresource Sciences, Nihon University, Kanagawa, Japan.
Kenta HagiwaraLife Science Research Center, College of Bioresource Sciences, Nihon University, Kanagawa, Japan.
Naoya HirataLife Science Research Center, College of Bioresource Sciences, Nihon University, Kanagawa, Japan.
Shoko WatanabeLife Science Research Center, College of Bioresource Sciences, Nihon University, Kanagawa, Japan.
Minami ToriyabeLife Science Research Center, College of Bioresource Sciences, Nihon University, Kanagawa, Japan.
Hatsumi Shiratori-TakanoLife Science Research Center, College of Bioresource Sciences, Nihon University, Kanagawa, Japan.
Kenji UedaLife Science Research Center, College of Bioresource Sciences, Nihon University, Kanagawa, Japan.
Nihon University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledThe LitR/CarH family of proteins is a light-sensitive MerR family of transcriptional regulators that contain an adenosyl B12 (coenzyme B12 or AdoB12)-binding domain at the C terminus. The genes encoding these proteins are found in phylogenetically diverse bacterial genera; however, the biochemical properties of these proteins from Gram-positive bacteria remain poorly understood. We performed genetic and biochemical analyses of a homolog of the LitR protein from Bacillus megaterium QM B1551, a Gram-positive endospore-forming soil bacterium. Carotenoid production was induced by illumination in this bacterium. In vivo analysis demonstrated that LitR plays a central role in light-inducible carotenoid production and serves as a negative regulator of the light-inducible transcription of crt and litR itself. Biochemical evidence showed that LitR in complex with AdoB12 binds to the promoter regions of litR and the crt operon in a light-sensitive manner. In vitro transcription experiments demonstrated that AdoB12-LitR inhibited the specific transcription of the crt promoter generated by a σ(A)-containing RNA polymerase holoenzyme under dark conditions. Collectively, these data indicate that the AdoB12-LitR complex serves as a photoreceptor with DNA-binding activity in B. megaterium QM B1551 and that its function as a transcriptional repressor is fundamental to the light-induced carotenoid production. IMPORTANCE: Members of the LitR/CarH family are AdoB12-based photosensors involved in light-inducible carotenoid production in nonphototrophic Gram-negative bacteria. Our study revealed that Bacillus LitR in complex with AdoB12 also serves as a transcriptional regulator with a photosensory function, which indicates that the LitR/CarH family is generally involved in the light-inducible carotenoid production of nonphototrophic bacteria.

Indexed as

Amino Acid SequenceBacillus megateriumBacterial ProteinsBase SequenceBinding SitesCarotenoidsCobamidesDeoxyribonuclease IDNA FootprintingGene Expression Regulation, BacterialLightMolecular Sequence DataPromoter Regions, GeneticProtein BindingBacterial ProteinsCarotenoidscobamamideCobamidesDeoxyribonuclease I

Identifiers

PMID25917914
PMCPMC4524180
OpenAlexW2001998436

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.