Evidence map›Paper›PMID 25917813›Full record

ArticleThe Journal of allergy and clinical immunology2015

Functional analysis of naturally occurring DCLRE1C mutations and correlation with the clinical phenotype of ARTEMIS deficiency.

Kerstin Felgentreff, Yu Nee Lee, Francesco Frugoni, Likun Du, Mirjam van der Burg, Silvia Giliani, Ilhan Tezcan, Ismail Reisli, Ester Mejstrikova, Jean-Pierre de Villartay and 3 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 74 citations in OpenAlex.

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  10. Demographic, clinical, immunological, and molecular features of iranian national cohort of patients with defect in DCLRE1C gene.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2023
    Article
  11. Article
  12. A novel splice donor mutation inFrontiers in oncology · 2023
    Article
  13. Article
  14. Structure and Function of SNM1 Family Nucleases.Advances in experimental medicine and biology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 6 countries.

Kerstin FelgentreffDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Yu Nee LeeDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Francesco FrugoniDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Likun DuDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Mirjam van der BurgDepartment of Immunology, Erasmus Medical Center, Rotterdam, The Netherlands.
Silvia GilianiAngelo Nocivelli Institute for Molecular Medicine, Department of Pediatrics, University of Brescia, Brescia, Italy.
Ilhan TezcanImmunology Department, Ihsan Dogramaci Children's Hospital, Hacettepe University Medical School, Sıhhiye, Ankara, Turkey.
Ismail ReisliDepartment of Pediatric Immunology and Allergy, Necmettin Erbakan University, Meram Medical Faculty, Konya, Turkey.
Ester MejstrikovaCLIP-Childhood Leukemia Investigation Prague, Department of Pediatric Hematology and Oncology, 2nd Faculty of Medicine and University Hospital Motol, Charles University, Prague, Czech Republic.
Jean-Pierre de VillartayLaboratory of "Genome Dynamics in the Immune System", INSERM UMR1163, Université Paris Descartes Sorbonne Paris Cité, Institut Imagine, Paris, France.
Barry P SleckmanDepartment of Pathology and Immunology, Washington University School of Medicine, St Louis, Mo.
John ManisDepartment of Transfusion Medicine, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Luigi D NotarangeloDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, Mass; Harvard Stem Cell Institute, Harvard University, Boston, Mass. Electronic address: Luigi.Notarangelo@childrens.harvard.edu.
Boston Children's Hospital · USCharles University · CZDélégation Paris 5 · FRErasmus MC · NLHacettepe University Hospital · TRNecmettin Erbakan University · TRUniversity of Brescia · ITWashington University in St. Louis · US

Funding

Role of TACI mutations in CVIDP01AI076210 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TERHORST, CORNELIS P · 2009 to 2013
$9.0M
ATM FUNCTION DURING V(D)J RECOMBINATIONR01AI074953 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI SLECKMAN, BARRY P · 2009 to 2023
$5.9M
Modeling and correcting human SCID using patient-derived iPS cellsR01AI100887 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI MANIS, JOHN P · 2012 to 2020
$4.5M
Role of HIV Envelope Proteins In Viral Replication and HIV PathogenesisZ01AI000887 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI FAUCI, ANTHONY S. · 2001 to 2008
$1.6M
Intramural NIH HHS Z01 AI000887NIAID NIH HHS P01 AI076210NIAID NIH HHS P01 AI076210-05NIAID NIH HHS R01AI00887NIAID NIH HHS R01 AI074953NIAID NIH HHS R01 AI100887
6 · The paper itself

Abstract

backgroundThe endonuclease ARTEMIS, which is encoded by the DCLRE1C gene, is a component of the nonhomologous end-joining pathway and participates in hairpin opening during the V(D)J recombination process and repair of a subset of DNA double-strand breaks. Patients with ARTEMIS deficiency usually present with severe combined immunodeficiency (SCID) and cellular radiosensitivity, but hypomorphic mutations can cause milder phenotypes (leaky SCID).

objectiveWe sought to correlate the functional effect of human DCLRE1C mutations on phenotypic presentation in patients with ARTEMIS deficiency.

methodsWe studied the recombination and DNA repair activity of 41 human DCLRE1C mutations in Dclre1c(-/-) v-abl kinase-transformed pro-B cells retrovirally engineered with a construct that allows quantification of recombination activity by means of flow cytometry. For assessment of DNA repair efficacy, resolution of γH2AX accumulation was studied after ionizing radiation.

resultsLow or absent activity was detected for mutations causing a typical SCID phenotype. Most of the patients with leaky SCID were compound heterozygous for 1 loss-of-function and 1 hypomorphic allele, with significant residual levels of recombination and DNA repair activity. Deletions disrupting the C-terminus result in truncated but partially functional proteins and are often associated with leaky SCID. Overexpression of hypomorphic mutants might improve the functional defect.

conclusionsCorrelation between the nature and location of DCLRE1C mutations, functional activity, and the clinical phenotype has been observed. Hypomorphic variants that have been reported in the general population can be disease causing if combined in trans with a loss-of-function allele. Therapeutic strategies aimed at inducing overexpression of hypomorphic alleles might be beneficial.

Indexed as

AdolescentAdultAllelesB-LymphocytesCell Line, TransformedChildChild, PreschoolDNA-Binding ProteinsDNA Mutational AnalysisDNA RepairEndonucleasesHeterozygoteHistonesHumansInfantInfant, NewbornDCLRE1C protein, humanDNA-Binding ProteinsEndonucleasesH2AX protein, humanHistonesNuclear ProteinsOncogene Proteins v-ablARTEMIS deficiencyDCLRE1C mutationsDNA repairnonhomologous end-joiningsevere combined immunodeficiencyV(D)J recombination

Identifiers

PMID25917813
PMCPMC4494888
OpenAlexW2088886002

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.