ArticlePlant biotechnology journal2016
Transcriptome-wide analysis of the MADS-box gene family in the orchid Erycina pusilla.
Article in Plant biotechnology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed, 84 citations in OpenAlex.
- Orchid phylogenetics and evolution: history, current status and prospects.Annals of botany · 2025Review
- Characterization of MADS-Box Gene Family inPlants (Basel, Switzerland) · 2025Article
- MADS-Box Family Genes inPlants (Basel, Switzerland) · 2024Article
- Mechanism underlying the rapid growth of Phalaenopsis equestris induced byMolecular genetics and genomics : MGG · 2024Article
- Genome-wide analysis of the MADS-box gene family in Lonicera japonica and a proposed floral organ identity model.BMC genomics · 2023Article
- Article
- Functional conservation and divergence ofFrontiers in plant science · 2023Article
- Review
- Orchid Phylotranscriptomics: The Prospects of Repurposing Multi-Tissue Transcriptomes for Phylogenetic Analysis and Beyond.Frontiers in plant science · 2022Article
- Characterization of ThreeFrontiers in plant science · 2022Article
- Genome-Wide Analysis and the Expression Pattern of the MADS-Box Gene Family inPlants (Basel, Switzerland) · 2021Article
- Genome-wide identification of MADS-box gene family in sacred lotus (Nelumbo nucifera) identifies a SEPALLATA homolog gene involved in floral development.BMC plant biology · 2020Article
- High-efficiency CRISPR/Cas-based editing of Phalaenopsis orchid MADS genes.Plant biotechnology journal · 2020Article
- Development of Improved Fruit, Vegetable, and Ornamental Crops Using the CRISPR/Cas9 Genome Editing Technique.Plants (Basel, Switzerland) · 2019Review
- Genome-Wide Identification, Gene Structure and Expression Analysis of the MADS-Box Gene Family Indicate Their Function in the Development of Tobacco (International journal of molecular sciences · 2019Article
- Identification and expression profiling of selected MADS-box family genes in Dendrobium officinale.Genetica · 2019Article
- Article
- Morphological and Molecular Characterization of Orchid Fruit Development.Frontiers in plant science · 2019Article
- Asymmetric birth and death of type I and type II MADS-box gene subfamilies in the rubber tree facilitating laticifer development.PloS one · 2019Article
- Floral Induction and Flower Development of Orchids.Frontiers in plant science · 2019Review
Corrections and comments
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Authors and funding
10 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Orchids exhibit a range of unique flower shapes and are a valuable ornamental crop. MADS-box transcription factors are key regulatory components in flower initiation and development. Changing the flower shape and flowering time can increase the value of the orchid in the ornamental horticulture industry. In this study, 28 MADS-box genes were identified from the transcriptome database of the model orchid Erycina pusilla. The full-length genomic sequences of these MADS-box genes were obtained from BAC clones. Of these, 27 were MIKC-type EpMADS (two truncated forms) and one was a type I EpMADS. Eleven EpMADS genes contained introns longer than 10 kb. Phylogenetic analysis classified the 24 MIKC(c) genes into nine subfamilies. Three specific protein motifs, AG, FUL and SVP, were identified and used to classify three subfamilies. The expression profile of each EpMADS gene correlated with its putative function. The phylogenetic analysis was highly correlated with the protein domain identification and gene expression results. Spatial expression of EpMADS6, EpMADS12 and EpMADS15 was strongly detected in the inflorescence meristem, floral bud and seed via in situ hybridization. The subcellular localization of the 28 EpMADS proteins was also investigated. Although EpMADS27 lacks a complete MADS-box domain, EpMADS27-YFP was localized in the nucleus. This characterization of the orchid MADS-box family genes provides useful information for both orchid breeding and studies of flowering and evolution.
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