Evidence map›Paper›PMID 25916844›Full record

ArticleNucleic acids research2015

TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer.

Jeremy Chien, Hugues Sicotte, Jian-Bing Fan, Sean Humphray, Julie M Cunningham, Kimberly R Kalli, Ann L Oberg, Steven N Hart, Ying Li, Jaime I Davila and 20 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Morphological and molecular characterization of epithelial ovarian cancer: SEOM-SEAP consensus guidelines for biomarker integration in clinical practice.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Guideline
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Molecular Management of High-Grade Serous Ovarian Carcinoma.International journal of molecular sciences · 2022
    Review
  10. The Genomic Landscape of Early-Stage Ovarian High-Grade Serous Carcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Interferon-γ signaling is associated withNPJ precision oncology · 2019
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 10 institutions in 2 countries.

Jeremy ChienDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
Hugues SicotteDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA Sicotte.Hugues@mayo.edu.
Jian-Bing FanIllumina, Inc., San Diego, CA 92122, USA.
Sean HumphrayIllumina Cambridge Ltd, Little Chesterford, Essex CB10 1, UK.
Julie M CunninghamDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA.
Kimberly R KalliDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Ann L ObergDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Steven N HartDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Ying LiDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Jaime I DavilaDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Saurabh BahetiDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Chen WangDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Sabine DietmannWellcome Trust, Medical Research Council Stem Cell Institute, University of Cambridge, Cambridge CB2 1TN, UK.
Elizabeth J AtkinsonDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Yan W AsmannDepartment of Health Sciences Research, Mayo Clinic, Jacksonville, FL 32224, USA.
Debra A BellDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA.
Takayo OtaDepartment of Internal Medicine, Rinku General Medical Center, Izumi-sano, 598-8577, Japan.
Yaman TarabishyDepartment of Pathology and Immunology, Washington University in St. Louis, St. Louis, MO 63110, USA.
Rui KuangDepartment of Biomedical Informatics and Computational Biology, University of Minnesota, Minneapolis, MN 55414, USA.
Marina BibikovaIllumina, Inc., San Diego, CA 92122, USA.
R Keira CheethamIllumina Cambridge Ltd, Little Chesterford, Essex CB10 1, UK.
Russell J GrocockIllumina Cambridge Ltd, Little Chesterford, Essex CB10 1, UK.
Elizabeth M SwisherDepartment of Obstetrics and Gynecology, University of Washington, Seattle, WA 98109, USA.
John PedenIllumina Cambridge Ltd, Little Chesterford, Essex CB10 1, UK.
David BentleyIllumina Cambridge Ltd, Little Chesterford, Essex CB10 1, UK.
Jean-Pierre A KocherDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Scott H KaufmannDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA.
Lynn C HartmannDepartment of Oncology, Mayo Clinic, Rochester, MN 55905, USA hartmann.lynn@mayo.edu.
Viji ShridharDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA shridhar.vijayalakshmi@mayo.edu.
Ellen L GoodeDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.
Mayo Clinic in Florida · USIllumina (United Kingdom) · GBIllumina (United States) · USMayo Clinic in Arizona · USWinnMed · USUniversity of Kansas Medical Center · USUniversity of Minnesota · USUniversity of Washington · USWashington University in St. Louis · USWellcome/MRC Cambridge Stem Cell Institute · GB

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI Felicity Enders · 1985 to 2026
$151.3M
Use of microfluidic tumor cultures to enable clinical trials of therapies for ovarian cancerP50CA136393 · NCI · MAYO CLINIC ROCHESTER · PI Zhenkun Lou · 2009 to 2026
$37.0M
Genetic Variation in the NF-kappaB Pathway and Ovarian Cancer EtiologyR01CA122443 · NCI · MAYO CLINIC ROCHESTER · PI GOODE, ELLEN L. · 2007 to 2012
$2.7M
NCI NIH HHS P30 CA015083NCI NIH HHS P30-CA15083NCI NIH HHS P50 CA136393NCI NIH HHS P50-CA136393NCI NIH HHS R01-CA122443Wellcome Trust 97922
6 · The paper itself

Abstract

To determine early somatic changes in high-grade serous ovarian cancer (HGSOC), we performed whole genome sequencing on a rare collection of 16 low stage HGSOCs. The majority showed extensive structural alterations (one had an ultramutated profile), exhibited high levels of p53 immunoreactivity, and harboured a TP53 mutation, deletion or inactivation. BRCA1 and BRCA2 mutations were observed in two tumors, with nine showing evidence of a homologous recombination (HR) defect. Combined Analysis with The Cancer Genome Atlas (TCGA) indicated that low and late stage HGSOCs have similar mutation and copy number profiles. We also found evidence that deleterious TP53 mutations are the earliest events, followed by deletions or loss of heterozygosity (LOH) of chromosomes carrying TP53, BRCA1 or BRCA2. Inactivation of HR appears to be an early event, as 62.5% of tumours showed a LOH pattern suggestive of HR defects. Three tumours with the highest ploidy had little genome-wide LOH, yet one of these had a homozygous somatic frame-shift BRCA2 mutation, suggesting that some carcinomas begin as tetraploid then descend into diploidy accompanied by genome-wide LOH. Lastly, we found evidence that structural variants (SV) cluster in HGSOC, but are absent in one ultramutated tumor, providing insights into the pathogenesis of low stage HGSOC.

Indexed as

Genes, p53MutationRecombinational DNA RepairTetraploidyCarcinomaDNA PrimaseFemaleHumansLoss of HeterozygosityMutation RateOvarian NeoplasmsDNA PrimasePRIM2 protein, human

Identifiers

PMID25916844
PMCPMC4538798
OpenAlexW2008191042

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.