Evidence map›Paper›PMID 25916209›Full record

ArticleTumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine2015

XPD, APE1, and MUTYH polymorphisms increase head and neck cancer risk: effect of gene-gene and gene-environment interactions.

Sambuddha Das, Aditi Bhowmik, Abhinandan Bhattacharjee, Biswadeep Choudhury, Momota Naiding, Agniv Kr Laskar, Sankar Kumar Ghosh, Yashmin Choudhury

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Article in Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 2 syntheses or guidelines pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Review
  6. Article
  7. BRCA1 and MDM2 as independent blood-based biomarkers of head and neck cancer.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Sambuddha DasDepartment of Biotechnology, Assam University, Silchar, 788011, India.
Aditi BhowmikDepartment of Biotechnology, Assam University, Silchar, 788011, India.
Abhinandan BhattacharjeeDepartment of ENT, Silchar Medical College and Hospital, Silchar, 788014, India.
Biswadeep ChoudhuryDepartment of Biochemistry, Silchar Medical College and Hospital, Silchar, 788014, India.
Momota NaidingDepartment of Pathology, Silchar Medical College and Hospital, Silchar, 788014, India.
Agniv Kr LaskarDepartment of Biotechnology, Assam University, Silchar, 788011, India.
Sankar Kumar GhoshDepartment of Biotechnology, Assam University, Silchar, 788011, India.
Yashmin ChoudhuryDepartment of Biotechnology, Assam University, Silchar, 788011, India. yashminchoudhury@gmail.com.
Assam University · INSilchar Medical College and Hospital · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the present study, we investigated the effect of the DNA repair gene polymorphisms XPD Asp312Asn (G>A), APE1 Asp148Glu (T>G), and MUTYH Tyr165Cys (G>A) on the risk for head and neck cancer (HNC) in association with tobacco use in a population of Northeast India. The study subjects comprised of 80 HNC patients and 92 healthy controls. Genotyping was performed using amplification refractory mutation system-PCR (ARMS-PCR) for XPD Asp312Asn (G>A) and PCR using confronting two-pair primers (PCR-CTPP) for APE1 Asp148Glu (T>G) and MUTYH Tyr165Cys (G>A). The XPD Asp/Asn genotype increased the risk for HNC by 2-fold (odds ratio, OR = 2.072; 95 % CI, 1.025-4.190; p < 0.05). Interaction between APE1 Asp/Asp and XPD Asp/Asn as well as MUTYH Tyr/Tyr and XPD Asp/Asn genotypes further increased the risk by 2.9 (OR = 2.97; 95 % CI, 1.16-7.61; p < 0.05) and 2.3 (OR = 2.37; 95 % CI, 1.11-5.10; p < 0.05) folds, respectively. The risk was further increased in heavy smokers with the XPD Asp/Asn genotype and heavy tobacco chewers with XPD Asn/Asn genotype by 7.7-fold (OR = 7.749; 95 % CI, 2.53-23.70; p < 0.05) and 10-fold (OR = 10; 95 % CI, 1.26-79.13; p < 0.05), respectively. We thus conclude that the XPD Asp312Asn and APE1 Asp148Glu polymorphisms increase the risk for HNC in association with smoking and/or tobacco chewing in the population under study.

Indexed as

AdultCase-Control StudiesDNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesDNA RepairFemaleGene-Environment InteractionGenetic Predisposition to DiseaseGenotypeHead and Neck NeoplasmsHumansIndiaMaleMiddle AgedPolymorphism, GeneticRiskAPEX1 protein, humanDNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesERCC2 protein, humanmutY adenine glycosylaseXeroderma Pigmentosum Group D ProteinAPE1Head and neck cancerMUTYHPolymorphismXPD

Identifiers

PMID25916209
OpenAlexW2059467757

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.