Evidence map›Paper›PMID 25915866›Full record

ArticlePloS one2015

Microbial diversity in a permanently cold and alkaline environment in Greenland.

Mikkel A Glaring, Jan K Vester, Jeanette E Lylloff, Waleed Abu Al-Soud, Søren J Sørensen, Peter Stougaard

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mikkel A GlaringDepartment of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.
Jan K VesterDepartment of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.
Jeanette E LylloffDepartment of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.
Waleed Abu Al-SoudDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Søren J SørensenDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Peter StougaardDepartment of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The submarine ikaite columns located in the Ikka Fjord in Southern Greenland represent a unique, permanently cold (less than 6°C) and alkaline (above pH 10) environment and are home to a microbial community adapted to these extreme conditions. The bacterial and archaeal community inhabiting the ikaite columns and surrounding fjord was characterised by high-throughput pyrosequencing of 16S rRNA genes. Analysis of the ikaite community structure revealed the presence of a diverse bacterial community, both in the column interior and at the surface, and very few archaea. A clear difference in overall taxonomic composition was observed between column interior and surface. Whereas the surface, and in particular newly formed ikaite material, was primarily dominated by Cyanobacteria and phototrophic Proteobacteria, the column interior was dominated by Proteobacteria and putative anaerobic representatives of the Firmicutes and Bacteroidetes. The results suggest a stratification of the ikaite columns similar to that of classical soda lakes, with a light-exposed surface inhabited by primary producers and an anoxic subsurface. This was further supported by identification of major taxonomic groups with close relatives in soda lake environments, including members of the genera Rhodobaca, Dethiobacter, Thioalkalivibrio and Tindallia, as well as very abundant groups related to uncharacterised environmental sequences originally isolated from Mono Lake in California.

Indexed as

Water MicrobiologyAdaptation, BiologicalArchaeaBacteriaBacterial Physiological PhenomenaBiodiversityCold TemperatureGeologic SedimentsGreenlandHydrogen-Ion ConcentrationPhylogenyRNA, ArchaealRNA, BacterialRNA, Ribosomal, 16SRNA, ArchaealRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID25915866
PMCPMC4411134

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.